RNA id: TU16332


Basic Information

Item Value
RNA id TU16332
length 1899
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id G12118
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 20720642 ~ 20731920 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aggtcagCTCAAAGTTATCTGGTCATTTTTTGTATGAAAGGTGCCGAAAAGAAGAAGATCAGAGAAGAAGATcactctttttcactcttttacCAGCTTAAATATGATAagatataacacacacacagagaaagagagagagtgcatcGGTTAACATCTGCGtgtgttacaaaaaaaagaaagaaagaaagaaagaaagaaagaataaaatgcgtaatgtaaataaaatatacaatcgaactatttaacaagactagccctccagagactcaagataaaaaaataggaGCAATCATTTACATTTCAACAATGTagcaagtaaataaaataaaataaaatataatgtctagagcattttatatatatgaacaaACTGTATATGAACACGCGCTGTAAATTCTCCTGAATGCCCCGTGTTTTCCGTGTTccagaaaaaaatcaaacaaagaagcaaagaaacaaacaaagaaacaaagtaacaaaataaaacacccttctttttttcttttgagagATATTTTGGGAGGAGTCTGAATGCGATACGAACTCTCTGTCGTGTTTATCTGAATTCAACAGAACAAACTCGTAAATTCAGCCTCAGCATTAGCAGTTTCTTCTTGAGGTTTAACTTCATCTTTTTATAACTTCAACTTTTCAACGGAAACGAACGAGAAACGGAAAGAGgcgcatttttttttatttatcgcGTACGCCCGTACACTCCAGTCTCAAGAATGTGCAACAAAACTCTCACACTTTTCTCAAACTCATCACTCGTtttgcttgaaaaaaaaaaaaaaaacagacaaaaaattaaataaataaaagctttgtTAAGGGCACTGTAGAGTGAACGTTCCTGTGTTCATTTCCGCGACGCTaccacttcttcttctGATCACGCCTTGCTCTCCACGTCGTTCGCCAGCGAGAGGGCGATGGGTGACTTTGCTTCCGACTGGAGCTTCTTCAAATCTTCGTCTTCAGACCTGCTCGACTCGTCTTCGTGGATTTTCCTGTGCAGGAGATCATTTCATTAAGGAAGGATTTATATGCAAGAACGAGTGAGGAACGGCATGCACTGATGAGCACGGCACAAGTGGACGAATGGAATGAAAAGTGTAGTAACACCAGACGTATGTGTATGGGTGCGTATGGGTGATTGATACACAAGAACATGCACATGCAGACACTCTAAAAGGACATCTACGGAACATCTAGAGAGGTCCATACTCGTTCTGTGGAGCAGATGGGCCGCTGGAGCCAGCTGTGCCCAGAGCGTGCCCGGGGCCATCCTGGGGGAGGTGTGTTTCTGAAGCCTGGGGGGTTCCTTCATCTAGATGGAGCTCATGGTTCATTGAGGGGACTTTCTGAGGGACGGGTTCGTGTGAATTCTGTAACAGGCTCGTCTCTAGTTCTTCAGCATCGTTCTCTGGTTCTTTAGGTgtgttttctgtgctaaaactaaGACTAGGAGAAGGAGGCTCCTGATTGGTGAAATCAGGAGATGTTATCTGAGAATCTGCCTGGATTGATTGGTTGGAAGGGGCTTCTGGGATTTGAACAGGTAAAGGATCAGCCAGGTCCACCAAAGGAACATCGGAGGAGAGCAGGGAGCGGGAAAGAGGCTGGGAGAAGCTTTTAGGGGTGCTGGTTTCAGGGCCTGTGGTCAGGGCAGGTCTGGGATCAGGGGGCGGAGCCGTGAGGCTGGACGTTAGGGTGGTGCTCTCGCTAACGGGGCTGCTCTGGCTAAGGTCAAAGGTGTCGGTAACTGTGTCTGAGTTTGTGGCCATTGATAAGGGCAAGTCCACCACAGTGGCCGCGGCTTCGGCCAGTCGCCTGTGAgaagcagggagagagagagagagaaagagagagagagagaaaaagagagagaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16213 lncRNA downstream 206882 20513561 ~ 20513760 (-) True G12018
TU16130 lncRNA downstream 498539 20221145 ~ 20222103 (-) True G11938
TU15984 lncRNA downstream 942927 19773629 ~ 19777715 (-) True G11821
TU15957 lncRNA downstream 1051400 19666960 ~ 19669242 (-) True G11801
TU16346 lncRNA upstream 108286 20840206 ~ 20844256 (-) True G12131
TU16347 lncRNA upstream 108286 20840206 ~ 20929217 (-) False G12131
TU16435 lncRNA upstream 228858 20960778 ~ 20961759 (-) True G12203
TU16594 lncRNA upstream 580752 21312672 ~ 21316677 (-) False LOC111193576
XR_002650613.1 lncRNA upstream 582678 21314598 ~ 21316705 (-) True LOC111193576
XM_022674842.1 mRNA downstream 281093 20067514 ~ 20439549 (-) False LOC103025963
XM_022674847.1 mRNA downstream 281093 20067514 ~ 20439549 (-) False LOC103025963
XM_022674840.1 mRNA downstream 281093 20067514 ~ 20439549 (-) True LOC103025963
XM_007260554.3 mRNA downstream 918319 19786123 ~ 19802323 (-) False jam3
XM_007260553.2 mRNA downstream 937007 19777857 ~ 19783635 (-) True vps26b
XM_022677893.1 mRNA upstream 180674 20912594 ~ 20943980 (-) True dixdc1
XM_007231430.3 mRNA upstream 481313 21213233 ~ 21219097 (-) True LOC103030049
XM_022674963.1 mRNA upstream 585581 21317501 ~ 21450195 (-) True sorl1
XM_022674978.1 mRNA upstream 725211 21457131 ~ 21465432 (-) True bco2
XM_022675004.1 mRNA upstream 742492 21474412 ~ 21482404 (-) True sdhd
TU16104 other downstream 638200 19998440 ~ 20082442 (-) True G11917
TU16077 other downstream 918429 19785981 ~ 19802213 (-) True jam3
trnap-cgg other downstream 1481665 19238906 ~ 19238977 (-) True trnap-cgg
TU15837 other downstream 1609070 19108713 ~ 19111572 (-) True G11719
XR_454920.3 other downstream 4366808 16323033 ~ 16353834 (-) False LOC103036671
trnak-cuu other upstream 243162 20975082 ~ 20975154 (-) True trnak-cuu
TU17143 other upstream 1261887 21993807 ~ 21994751 (-) True G12767
XR_002650646.1 other upstream 2807337 23539257 ~ 23553970 (-) False LOC111193708
XR_002650645.1 other upstream 2809414 23541334 ~ 23553970 (-) True LOC111193708
TU17895 other upstream 3052551 23784471 ~ 23803818 (-) False LOC103035686

Expression Profile