RNA id: TU16418


Basic Information

Item Value
RNA id TU16418
length 506
lncRNA type inter_gene
GC content 0.34
exon number 4
gene id G12187
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 21113855 ~ 21116020 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tagcaactgcctagcaaccacctggaaaacgttagcaactgcctagcaaccagttagcaactgcctagcaaccacttggaaaacgttagcaactgcctagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaacaccttagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaactgcctagcaaccacttagcaactgcctagcaaccacttggaaaacgttagcaactgcctagcaaccacttagcaactgcctagcaaccacctggaatacgttagcaactgcctagcaaccacttagcaacaccttagcaaccactaggaaaacgttagcaactgcctagcaaccacttagcaactgcctagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaaccacctagcaaccacttggaaaacg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16398 lncRNA upstream 24189 21056864 ~ 21089666 (+) False LOC103030577
TU16389 lncRNA upstream 121771 20991870 ~ 20992084 (+) True G12165
TU16239 lncRNA upstream 346456 20727543 ~ 20767399 (+) True G12038
TU16240 lncRNA upstream 358575 20728643 ~ 20755280 (+) True G12039
TU16235 lncRNA upstream 403177 20671034 ~ 20710678 (+) True G12034
TU16477 lncRNA downstream 55085 21171105 ~ 21171318 (+) True G12242
TU16536 lncRNA downstream 147907 21263927 ~ 21309318 (+) True G12297
TU16546 lncRNA downstream 196636 21312656 ~ 21313513 (+) True G12307
TU16565 lncRNA downstream 206018 21322038 ~ 21323725 (+) True G12325
TU16571 lncRNA downstream 210390 21326410 ~ 21327031 (+) True G12328
XM_022674940.1 mRNA upstream 60000 20994106 ~ 21053855 (+) True LOC103033418
XM_022674932.1 mRNA upstream 123791 20966272 ~ 20990064 (+) True LOC103033739
XM_007231431.3 mRNA upstream 153619 20951343 ~ 20960236 (+) True LOC103030893
XM_022674920.1 mRNA upstream 153619 20952512 ~ 20960236 (+) False LOC103030893
XM_015600779.2 mRNA upstream 205048 20902276 ~ 20908807 (+) True pih1d2
XM_007229377.3 mRNA downstream 428336 21544356 ~ 21549087 (+) True nkapd1
XM_007229378.3 mRNA downstream 458930 21574950 ~ 21597352 (+) True LOC103031614
XM_022677900.1 mRNA downstream 648938 21764958 ~ 21827382 (+) True LOC111194279
XM_022675083.1 mRNA downstream 728745 21844765 ~ 21905395 (+) True ttc12
XM_022675089.1 mRNA downstream 735016 21851036 ~ 21905395 (+) False ttc12
trnan-guu other upstream 137578 20976204 ~ 20976277 (+) True trnan-guu
TU16384 other upstream 141761 20963049 ~ 20972094 (+) False LOC103033739
TU16383 other upstream 141761 20966288 ~ 20972094 (+) False LOC103033739
TU15744 other upstream 1689791 19412844 ~ 19424064 (+) False LOC103043893
XR_002650987.1 other upstream 3974076 17139425 ~ 17139779 (+) False LOC111194200
TU16611 other downstream 343830 21459850 ~ 21463649 (+) True G12362
TU16873 other downstream 1213699 22329719 ~ 22341513 (+) False spa17
TU16874 other downstream 1213699 22329719 ~ 22384972 (+) False spa17
TU16886 other downstream 1357632 22473652 ~ 22512636 (+) False oaf
TU17542 other downstream 2737978 23853998 ~ 23855353 (+) True G13067

Expression Profile