RNA id: TU16546


Basic Information

Item Value
RNA id TU16546
length 802
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G12307
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 21312656 ~ 21313513 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACAGTTTCAGcatgtttattttagtataaGTGGTTCTTAAAACCCCTCGGACTGTTCCTCTTCATAAGATTCATGTCTGTAAATCCCTCCATAGGCAAGCAGGATCCAACCAATACATGGCCAATGTGTCCAATGCCATTActgtgaaattaaaaaaaaaacttttacaacAAGACAGCGAGTGGAGTTTAGACATTAGTTATTACACACAGAACCACAGAGATGGTGTGAGTGAAgacaattaataaagaaaataaaataaaaacagcatagtTCCTCACTGTTACACAAAATGCCTGAAGCAGAGGTGAATATACATTTCCATGTTTTTACACGTGGTTTTCTGTGGTCATGAACAAGATGTATGATTTTACTGACACGACTCAAGCTGTTGCTAATAAGGCATTCATggcaaacatatttaaaataagtgaGACAAGATTGTTTGAAACTCCTGCCGTTTCTAGCCTACAGTTACTGTACAGCTCTGTCTGTAAGGCTCCGCCCCCGgaaacaaaattaattaaattaataataaaaaaaaaatgaaaatcaaaaagcaatgcaaactcatctaaagccctatccggactaagtaattttatcttttatggggttttttatcctctgtgattttattcctgtccagaacgaccatgtaccaggctgaattatctcctgtttttctctgaactcctcctcgcgtttaataaaataactttggtaacactttacatttagtgttgactaactaacatgaattattaaattaatgcattagttaccatgaacAAGACATtag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16536 lncRNA upstream 3338 21263927 ~ 21309318 (+) True G12297
TU16477 lncRNA upstream 141338 21171105 ~ 21171318 (+) True G12242
XR_002650607.1 lncRNA upstream 149910 21056753 ~ 21162746 (+) True LOC103030577
TU16418 lncRNA upstream 196636 21113855 ~ 21116020 (+) True G12187
TU16398 lncRNA upstream 222990 21056864 ~ 21089666 (+) False LOC103030577
TU16565 lncRNA downstream 8525 21322038 ~ 21323725 (+) True G12325
TU16571 lncRNA downstream 12897 21326410 ~ 21327031 (+) True G12328
TU16621 lncRNA downstream 157494 21471007 ~ 21471993 (+) True G12369
TU16623 lncRNA downstream 159102 21472615 ~ 21475035 (+) True G12370
TU16628 lncRNA downstream 169600 21483113 ~ 21498147 (+) False G12373
XM_022674940.1 mRNA upstream 258801 20994106 ~ 21053855 (+) True LOC103033418
XM_022674932.1 mRNA upstream 322592 20966272 ~ 20990064 (+) True LOC103033739
XM_007231431.3 mRNA upstream 352420 20951343 ~ 20960236 (+) True LOC103030893
XM_022674920.1 mRNA upstream 352420 20952512 ~ 20960236 (+) False LOC103030893
XM_015600779.2 mRNA upstream 403849 20902276 ~ 20908807 (+) True pih1d2
XM_007229377.3 mRNA downstream 230843 21544356 ~ 21549087 (+) True nkapd1
XM_007229378.3 mRNA downstream 261437 21574950 ~ 21597352 (+) True LOC103031614
XM_022677900.1 mRNA downstream 451445 21764958 ~ 21827382 (+) True LOC111194279
XM_022675083.1 mRNA downstream 531252 21844765 ~ 21905395 (+) True ttc12
XM_022675089.1 mRNA downstream 537523 21851036 ~ 21905395 (+) False ttc12
trnan-guu other upstream 336379 20976204 ~ 20976277 (+) True trnan-guu
TU16384 other upstream 340562 20963049 ~ 20972094 (+) False LOC103033739
TU16383 other upstream 340562 20966288 ~ 20972094 (+) False LOC103033739
TU15744 other upstream 1888592 19412844 ~ 19424064 (+) False LOC103043893
XR_002650987.1 other upstream 4172877 17139425 ~ 17139779 (+) False LOC111194200
TU16611 other downstream 146337 21459850 ~ 21463649 (+) True G12362
TU16873 other downstream 1016206 22329719 ~ 22341513 (+) False spa17
TU16874 other downstream 1016206 22329719 ~ 22384972 (+) False spa17
TU16886 other downstream 1160139 22473652 ~ 22512636 (+) False oaf
TU17542 other downstream 2540485 23853998 ~ 23855353 (+) True G13067

Expression Profile