RNA id: TU16623


Basic Information

Item Value
RNA id TU16623
length 2373
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G12370
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 21472615 ~ 21475035 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gctgcagGAACACTGCACTCACCATTTCCAAAGACTTGGCTATCAACTTCACTGGTTCATTGATTAACCTATCGTTCATAATAACAAACCACACAATCCATAAAACtggctttattctgtttaagtTTAAGACAAATAACTTTACTCAAAGCTAGCGCTTGTGCGTTAAAATCTGACAGAGCAGATTCAAAACACTTAAGAGTGACATCACACTCGTGAGCACGTCTGAGCCGTTACAAACACACTTCTTCATCATGAAGGTTATATTCGCAAGCAGCGCCTTTTTTAGTTTTGGAATAATTTATAGAAGCATTTTACCAGAATTTGACaagaaaaacaagttttatACAAAACCTGATTCGAGGGCACTCACTTACACTTTAATATTAAGGTgcatttaaactgtttttgagCAATGCTATAGAACAGCGATTCTCAACTGGTGGGTTGCCACAGGTTCAAAATAATTATTCTTAAATAATTAATGCTTATCTGGTTTTGGTACAGAGaattatatatttcttaaagcagagaaacagtttaaacagtgaACACTGAACATGATCTACTGTCAGAGACCACAGAAACTCTGATCTGATCAAAATTCATGCCCAACTGTCTCACCTAAAGCATCTTGTTTTGTagccttatttattttaggcagttttaatatttaaatttattgtagaaacctttAGACTTGCAGTTTTGtggtcttatttattttgtgcagttttgatattttattgtagtaacttttatacacGTAGTTcctactcattttttttattgctcttAGATTCACTTTGCATGCTTATGcatgtttaaatgggttttgatggctatttaaataaaatacattagtttggtttgtattcATTAAAAGTGGGTCGTGACATTCACATTAGAAGCCACGTAAAGTAAAAATTCAgatgaattcagatttgacctttcacattcatgttgcatgtccatggatcagacACATATCCggtttaggaccacatataaaagtgactcaaatctgatctgaaaaaatctgatttggcacgttcacacagctatgaaaaaaaaaggtctgagatctgagccacattgagcaaaaaatcagattttagtcatttcagcctggtaatgtgaacatagacttaatgaccatgagaaaatATGGGTTCTGGGCTGAGACTTGTAGGAAACCTCTGTTCTAGAAGAACCATGTTTGTTTTCCTAAAAAACGATGtctgtaaatgtgtttaaaggTCTAAAGAACCTttactttataaaataatagttCTTACCATTTTTACACATCTCCAATAACATGGTTCTGTTGCACTGCTCAAAAATGCACCTGCATTTTTAGGAGTGTATGTtcagtttttaaacttttaaatcattattaagGGTAAAGTGTatagagaaagccaaaaaaacgtTAGACAAAGACTTTAGCAAATCATACAAGGTGCTGCCCACAGATTAAAGACAAATCACAAACTACCAGATGcccattttaaataaaaaattgaggCCATGCAAACATTGGTTATATCTGAGGCTGAAATATTGACAGTGAAATTTTCCTTAAATGCAACTATGGATTAAGCAAAGCTGAAATCACCAGTTACAGAGCTGTAATGGCAGTGAAGAGTGTGGGAATCTGGTCCTCTAAAAAGCTCATGTTTTATCACCTGTTGTGATAAATGCTTTAGAATACCTCCCATTACGTCACAAATGCTCCCAAATAAAAACGATTCACAAAAAAGCCTTTAATATTCCTTCAATATGGCTGAACTGGGGTTATCAAGGCCTTTCagctaataaaaaacaaataagccaGTGAGTAAAGATACCTAAACAGATACCTTGAGGTTGATGTGAACAGACAGAACAAGACACTGATATTTGTCCCTGGTTGCAGGTTAACCATATGAAATATGGTGATAATATTTAACACAGTTATTTCATCATCTGAAGAGATGTAGCACACCTAGTTGCCATGCAGTCGACGCCCAGACGCCCCAGATAAGATACTCAGTCTTAGCACAAGCATGAGAAACCTGAATCAGCAATTATACACACTTGTGAATCAATGTGGTATCTTgtcaaaattatatatttatagaatttACATATAATCAACTGGAACATGATGACAGAAGGTCCAGGACCTGAAACACTTTCCCCACATCCCCATATCAGTCCAGCTATTTACTCCATAGAAGAGCCACTGCTTTACAGATCCCCACGTCGTGGTAGTTGAAGTAGCAGAGACCCGCGAAAGTGACGGCTGACAGGAGGAAGAGGCCGGTGTTCGCCAACTTGATTTTAGCGTCTCCGTGAACGTAGTCCGTCACAACCTGACCCAGCCCC

Function

GO:

id name namespace
GO:1902600 proton transmembrane transport biological_process
GO:0006633 fatty acid biosynthetic process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
ko00620 Pyruvate metabolism
ko00640 Propanoate metabolism
ko00190 Oxidative phosphorylation
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko04932 Non-alcoholic fatty liver disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16621 lncRNA upstream 622 21471007 ~ 21471993 (+) True G12369
TU16571 lncRNA upstream 145584 21326410 ~ 21327031 (+) True G12328
TU16565 lncRNA upstream 148890 21322038 ~ 21323725 (+) True G12325
TU16546 lncRNA upstream 159102 21312656 ~ 21313513 (+) True G12307
TU16536 lncRNA upstream 163297 21263927 ~ 21309318 (+) True G12297
TU16628 lncRNA downstream 8078 21483113 ~ 21498147 (+) False G12373
TU16630 lncRNA downstream 8078 21483113 ~ 21519233 (+) True G12373
TU16636 lncRNA downstream 25162 21500197 ~ 21531538 (+) True G12379
TU16677 lncRNA downstream 135137 21610172 ~ 21613000 (+) True G12410
TU16683 lncRNA downstream 147593 21622628 ~ 21623561 (+) True G12414
XM_022674940.1 mRNA upstream 418760 20994106 ~ 21053855 (+) True LOC103033418
XM_022674932.1 mRNA upstream 482551 20966272 ~ 20990064 (+) True LOC103033739
XM_007231431.3 mRNA upstream 512379 20951343 ~ 20960236 (+) True LOC103030893
XM_022674920.1 mRNA upstream 512379 20952512 ~ 20960236 (+) False LOC103030893
XM_015600779.2 mRNA upstream 563808 20902276 ~ 20908807 (+) True pih1d2
XM_007229377.3 mRNA downstream 69321 21544356 ~ 21549087 (+) True nkapd1
XM_007229378.3 mRNA downstream 99915 21574950 ~ 21597352 (+) True LOC103031614
XM_022677900.1 mRNA downstream 289923 21764958 ~ 21827382 (+) True LOC111194279
XM_022675083.1 mRNA downstream 369730 21844765 ~ 21905395 (+) True ttc12
XM_022675089.1 mRNA downstream 376001 21851036 ~ 21905395 (+) False ttc12
TU16611 other upstream 8966 21459850 ~ 21463649 (+) True G12362
trnan-guu other upstream 496338 20976204 ~ 20976277 (+) True trnan-guu
TU16384 other upstream 500521 20963049 ~ 20972094 (+) False LOC103033739
TU16383 other upstream 500521 20966288 ~ 20972094 (+) False LOC103033739
TU15744 other upstream 2048551 19412844 ~ 19424064 (+) False LOC103043893
TU16873 other downstream 854684 22329719 ~ 22341513 (+) False spa17
TU16874 other downstream 854684 22329719 ~ 22384972 (+) False spa17
TU16886 other downstream 998617 22473652 ~ 22512636 (+) False oaf
TU17542 other downstream 2378963 23853998 ~ 23855353 (+) True G13067
TU17745 other downstream 3239316 24714351 ~ 24717226 (+) False ccdc9

Expression Profile