RNA id: TU16628


Basic Information

Item Value
RNA id TU16628
length 1624
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id G12373
representative False

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 21483113 ~ 21519233 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

taaacTTGAGACTTCTCATGggtttattcagattttaaagtaaaattggTACATTAATTACTTTATGACAAAGCGTCAAAAAGTAGTTTCAGCTTTTTTGTTTGACTGACAGCAACATGTCAAGCATTTTAAGTATGTTTAAAGTTGCACTGTTTAGGACAAATAGCCATTTTTAAGTAGATATTTAAAGTCTGTCACTTTCTAACAAGTTCTCTTCAATTCAAAtgaacaaatatattaaatataatgactCAAAGCAAAGAACATATGagtatttaaaaaagcataaacTGTAAATAGAGGGTCTTCAAACAGCAGTAACGTGTGTGGGAAGTTGTATTATGTAAATCCACAGACAGATTAAACTATTATAACAATTACAGTATCtgcccaaaaaagaaaaaaaaaaaaaaacatgtgaatgtcaatgtaaaaacggtgtttttatttattaggtgattttggagaatttctatttgtCCATTCTTTAGGAAATGTTAACCAAGTGTATGTGACACTGTATGtgttcaaatgatgtagtaaactaaagaATTGTCAAAAATTGAGATGTgacaaaataattattactaAAAATAATTTCTAGAAAACCAATCAGCAGAACATGACAGATTGTAGAACACTTGAAAAACAAAGCTTTACTTATTCTGTGTATTCGTGTAAATCAGTAAAATTAACAGTACCTAATTGTTTACATTAAGAACACATCATTGATTGGTGCACAAGTTTCAAGTTGAATAGTctataaaataacaattaataatGGCAACTtaacataataatttaaacCATTTTCCATTCACAATTATTATATAGCACCAATAGCTCACAAAAATTAACACGGGATCTTGTTTTTATCCATACTCAATCAATACTATTAATGTTCTTAGCAGCTCTGAGAGCAGACTTCATGGCCGTCTCAATCCAGCCGTGTGGCATGGCTGTGTGCTCTCCAGCGAAATGAATCCTCCCCTCTTTCTGGAACAGATCTTTAGAGTAGTGACTCTCCTGGTAGGGAGTGAAGATGGCGAACGCTCCATGGCTGTAAGGATCCAGAGACCATTTCTTTACAACACCTCCAGTACAGAGCTGCCGGATCCCCTCCCCATGGATCTTCACCAAGTCATTAAGCACCATGGCCATCAGCTCATCATCCGGCACCCCCTGGAAGAGCGTGGAATCATCAGAGCAGGTGTATGAAGCCAAAAGGGCGCCCCCTGTTCCAGGAAAGCTGTGGCTGGGGTAGTAAATGAAGCGTGAAGGCATATCTGTGATGCTTCTTCCACCCTTGATGCCTTGTTTCTCCCAGAACCTCTCACTGAAGCTCAGCACGACCTTGGTGGAGCTGGCGTAGTGCACCGAGCGCAGAGCCTCCATCTTCCGGACTGATAGCGGAGGCTGGAAATCAATGAAGAGTGAAGCTTTGGCTGTAGCCGTCACCAGAACGTAGTCGAAAGTGAAGTTGGTCAAAGCGGAGAGGTTTCGCCAGTCTTGAAATGAAACCGTCACATTACTCTCGGTTTGAGTGATGCGTTTGACCTTTGATCTGAGCAGAATTGTCGCATTGAGTACTTCATAAAATTTTCTGGGTATGTGATCCATGCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16623 lncRNA upstream 8078 21472615 ~ 21475035 (+) True G12370
TU16621 lncRNA upstream 11120 21471007 ~ 21471993 (+) True G12369
TU16571 lncRNA upstream 156082 21326410 ~ 21327031 (+) True G12328
TU16565 lncRNA upstream 159388 21322038 ~ 21323725 (+) True G12325
TU16546 lncRNA upstream 169600 21312656 ~ 21313513 (+) True G12307
TU16636 lncRNA downstream 2050 21500197 ~ 21531538 (+) True G12379
TU16677 lncRNA downstream 112025 21610172 ~ 21613000 (+) True G12410
TU16683 lncRNA downstream 124481 21622628 ~ 21623561 (+) True G12414
TU16692 lncRNA downstream 150205 21648352 ~ 21648643 (+) True G12421
TU16696 lncRNA downstream 181693 21679840 ~ 21716389 (+) True G12424
XM_022674940.1 mRNA upstream 429258 20994106 ~ 21053855 (+) True LOC103033418
XM_022674932.1 mRNA upstream 493049 20966272 ~ 20990064 (+) True LOC103033739
XM_007231431.3 mRNA upstream 522877 20951343 ~ 20960236 (+) True LOC103030893
XM_022674920.1 mRNA upstream 522877 20952512 ~ 20960236 (+) False LOC103030893
XM_015600779.2 mRNA upstream 574306 20902276 ~ 20908807 (+) True pih1d2
XM_007229377.3 mRNA downstream 46209 21544356 ~ 21549087 (+) True nkapd1
XM_007229378.3 mRNA downstream 76803 21574950 ~ 21597352 (+) True LOC103031614
XM_022677900.1 mRNA downstream 266811 21764958 ~ 21827382 (+) True LOC111194279
XM_022675083.1 mRNA downstream 346618 21844765 ~ 21905395 (+) True ttc12
XM_022675089.1 mRNA downstream 352889 21851036 ~ 21905395 (+) False ttc12
TU16611 other upstream 19464 21459850 ~ 21463649 (+) True G12362
trnan-guu other upstream 506836 20976204 ~ 20976277 (+) True trnan-guu
TU16384 other upstream 511019 20963049 ~ 20972094 (+) False LOC103033739
TU16383 other upstream 511019 20966288 ~ 20972094 (+) False LOC103033739
TU15744 other upstream 2059049 19412844 ~ 19424064 (+) False LOC103043893
TU16873 other downstream 831572 22329719 ~ 22341513 (+) False spa17
TU16874 other downstream 831572 22329719 ~ 22384972 (+) False spa17
TU16886 other downstream 975505 22473652 ~ 22512636 (+) False oaf
TU17542 other downstream 2355851 23853998 ~ 23855353 (+) True G13067
TU17745 other downstream 3216204 24714351 ~ 24717226 (+) False ccdc9

Expression Profile