RNA id: TU16683


Basic Information

Item Value
RNA id TU16683
length 245
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G12414
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 21622628 ~ 21623561 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCTGCACTAGTGAGGACTCCTGGTTGGTTGGTGACCTCTGAGAGGGTGTGTCTCCGCTGGCTAAAACGTGTCTGATAGGCGTTAAACATGTGGGCGTGATCCTCCTCTGCGTCAGGCTCCTCTGTCTCTATGCCCTCGTCAATCGACATCTCCATCATATTGCTGGGAGATGAAGTGCTGGATTTACGCACTGCCACAGGAGGGAGAGGATCCAGCATGCAGCCGTCCACCCTCGCTCTCTTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16677 lncRNA upstream 9628 21610172 ~ 21613000 (+) True G12410
TU16636 lncRNA upstream 91090 21500197 ~ 21531538 (+) True G12379
TU16630 lncRNA upstream 103395 21483113 ~ 21519233 (+) True G12373
TU16628 lncRNA upstream 124481 21483113 ~ 21498147 (+) False G12373
TU16623 lncRNA upstream 147593 21472615 ~ 21475035 (+) True G12370
TU16692 lncRNA downstream 24791 21648352 ~ 21648643 (+) True G12421
TU16696 lncRNA downstream 56279 21679840 ~ 21716389 (+) True G12424
TU16700 lncRNA downstream 61796 21685357 ~ 21685942 (+) True G12428
TU16722 lncRNA downstream 118296 21741857 ~ 21742304 (+) True G12445
TU16762 lncRNA downstream 275909 21899470 ~ 21899720 (+) True G12470
XM_007229378.3 mRNA upstream 25276 21574950 ~ 21597352 (+) True LOC103031614
XM_007229377.3 mRNA upstream 73541 21544356 ~ 21549087 (+) True nkapd1
XM_022674940.1 mRNA upstream 568773 20994106 ~ 21053855 (+) True LOC103033418
XM_022674932.1 mRNA upstream 632564 20966272 ~ 20990064 (+) True LOC103033739
XM_022674920.1 mRNA upstream 662392 20952512 ~ 20960236 (+) False LOC103030893
XM_022677900.1 mRNA downstream 141397 21764958 ~ 21827382 (+) True LOC111194279
XM_022675083.1 mRNA downstream 221204 21844765 ~ 21905395 (+) True ttc12
XM_022675089.1 mRNA downstream 227475 21851036 ~ 21905395 (+) False ttc12
XM_022677910.1 mRNA downstream 295657 21919218 ~ 21931304 (+) True LOC111194280
XM_022675098.1 mRNA downstream 314828 21938389 ~ 21955844 (+) True ankk1
TU16611 other upstream 158979 21459850 ~ 21463649 (+) True G12362
trnan-guu other upstream 646351 20976204 ~ 20976277 (+) True trnan-guu
TU16384 other upstream 650534 20963049 ~ 20972094 (+) False LOC103033739
TU16383 other upstream 650534 20966288 ~ 20972094 (+) False LOC103033739
TU15744 other upstream 2198564 19412844 ~ 19424064 (+) False LOC103043893
TU16873 other downstream 706158 22329719 ~ 22341513 (+) False spa17
TU16874 other downstream 706158 22329719 ~ 22384972 (+) False spa17
TU16886 other downstream 850091 22473652 ~ 22512636 (+) False oaf
TU17542 other downstream 2230437 23853998 ~ 23855353 (+) True G13067
TU17745 other downstream 3090790 24714351 ~ 24717226 (+) False ccdc9

Expression Profile