RNA id: TU16722


Basic Information

Item Value
RNA id TU16722
length 398
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G12445
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 21741857 ~ 21742304 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ataattactagttacttctccaaaaaagtaactgagttactccactataaaagtaactagttaccagtaaaagtaactattgcgttacttttgtgttacttgcCCCCGTAAACctcaacccccccaccccccaccttctcagagcgtgtttcataggccagatgaatagagtgcacgacagcaaagacaagaaCCTGCATAGAGGTTTGTCCACGACAAATTTTTAGTTCGGGGACATAATGTGAACTCAACGTGCACAGTTTAACCTTTGACCTCAGCTCTtaacacccacccacctattttCTATGATTGGCTGAAGCCGTAATTTTACTATACCttagccaatcattgcttaggtgttcatctcatcctcccctcccttgtgactaacacacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16696 lncRNA upstream 25468 21679840 ~ 21716389 (+) True G12424
TU16700 lncRNA upstream 55915 21685357 ~ 21685942 (+) True G12428
TU16692 lncRNA upstream 93214 21648352 ~ 21648643 (+) True G12421
TU16683 lncRNA upstream 118296 21622628 ~ 21623561 (+) True G12414
TU16677 lncRNA upstream 128857 21610172 ~ 21613000 (+) True G12410
TU16762 lncRNA downstream 157166 21899470 ~ 21899720 (+) True G12470
TU16779 lncRNA downstream 195437 21937741 ~ 21984852 (+) True G12483
TU16792 lncRNA downstream 250039 21992343 ~ 21993142 (+) True G12492
TU16796 lncRNA downstream 288136 22030440 ~ 22082671 (+) True G12496
TU16798 lncRNA downstream 297549 22039853 ~ 22066354 (+) True G12497
XM_007229378.3 mRNA upstream 144505 21574950 ~ 21597352 (+) True LOC103031614
XM_007229377.3 mRNA upstream 192770 21544356 ~ 21549087 (+) True nkapd1
XM_022674940.1 mRNA upstream 688002 20994106 ~ 21053855 (+) True LOC103033418
XM_022674932.1 mRNA upstream 751793 20966272 ~ 20990064 (+) True LOC103033739
XM_022674920.1 mRNA upstream 781621 20952512 ~ 20960236 (+) False LOC103030893
XM_022677900.1 mRNA downstream 22654 21764958 ~ 21827382 (+) True LOC111194279
XM_022675083.1 mRNA downstream 102461 21844765 ~ 21905395 (+) True ttc12
XM_022675089.1 mRNA downstream 108732 21851036 ~ 21905395 (+) False ttc12
XM_022677910.1 mRNA downstream 176914 21919218 ~ 21931304 (+) True LOC111194280
XM_022675098.1 mRNA downstream 196085 21938389 ~ 21955844 (+) True ankk1
TU16611 other upstream 278208 21459850 ~ 21463649 (+) True G12362
trnan-guu other upstream 765580 20976204 ~ 20976277 (+) True trnan-guu
TU16384 other upstream 769763 20963049 ~ 20972094 (+) False LOC103033739
TU16383 other upstream 769763 20966288 ~ 20972094 (+) False LOC103033739
TU15744 other upstream 2317793 19412844 ~ 19424064 (+) False LOC103043893
TU16873 other downstream 587415 22329719 ~ 22341513 (+) False spa17
TU16874 other downstream 587415 22329719 ~ 22384972 (+) False spa17
TU16886 other downstream 731348 22473652 ~ 22512636 (+) False oaf
TU17542 other downstream 2111694 23853998 ~ 23855353 (+) True G13067
TU17745 other downstream 2972047 24714351 ~ 24717226 (+) False ccdc9

Expression Profile