RNA id: TU17115


Basic Information

Item Value
RNA id TU17115
length 3057
lncRNA type inter_gene
GC content 0.52
exon number 3
gene id G12743
representative False

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 22133357 ~ 22139838 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

acaggagtgaaatccagtaacaggagtgaaatccagtaacaggagtgaaatccagtaacaggagtgaaatccagtaacaggagtgaaatccagtaacaggagtgaaatccagtaacaggagtgagtgccagtaacaggagtgaaatccagtaacaggagtgagtgccagtaacaggagtgaaatccagtaacaggaagtgaaatccagtaacaggagtgagtgccagtaacaggagtgagtgcagtaacaggagtgaaatccagtaacaggagtgagtgccagtaacaggagtgagtgccagtaacaggagtgaaatccagtaacaggagtgaaatccagtaacaggagtgagtattgtcccctggttattgatttattaatgtaaatattagttAATCTAAACCACTTTTtccaattttgtttttgttaatcattcatccatttgtttaataaattgcataATAAGTAATTTGatcaatttcaggtttgggtcttcttgataaataatatatattaaatatatacgttttttttcttcacccaGCTTTTTTtcgtccacactgtgtgtatagaTTTGCAGTTATTGaatttaatattgatatatatgtgaacaaacataccaGTAatcacaatagacaatatcacgattatcaaattTTATTGAGGTCGTGTCCATTTATTGTgcaataagtcgataatgtaatcaTTGTGACCGGCCTAgtcataaatgtaaattatttgaacatgcagtctataaccatttctttaaaattaagactttcttgagagaaaatcaagggaattagtggacttgcttttaaatatgctttttaaatgtcacataagttttggtaacaggactgaaaaaaaatttaacatcttcagattagaaaccatgtaaaaaaaataggaaaagctgcctgagattgaccagtacatgttttaatagttaaatatacatgtttttagattcaaagttgaaaaaatattttaaaaaatatacatttaatttggaaGAATAACAAAAAGctaatggcacccattcggtggaatggcccagaTATTATTTCCAATTAGTAAGCAATTGGGACACACCTATAATAATGAAATTACATTAGTAGTACATAAGTGTTTGCATTCTTATTGTTGAACACTGCctgtaactttacattttacctcttatgttttttttttttcaagtttctcAGCAGTTTGACTGTGAAGATAACATTGTGTTCATGTGAAAATTTAATTCCCATTAGAAGCTTTATATCAGTAGTGCTCATTTAAACTGTAATCATCCTGAACTCCCGTGTTCGTATTGCTCATTGCTCAATAACGCTCTGTGGTGACTGTATACTCACTACTAATACTGCAGTTACTGTGGACAAGTTGTGTTGATGTATTTTGCCTCAATCTACACTGCGAAAAGCTAGTTTACACATATGGAGTGGACTGTTTCACacgctgttaaaaaaaaTATCAGAACAATTACAGTTgcgtaaaaaagtatttgccctatACAGATTCCTttggtttttgctttttttgtcatattaatAATTTTCTGATCAAAAAACgttaatattagacaaagataacttgattaaatataaaaaagcactttttaaatgattatttaaaatatacaaaccaatgtagccctgtgtgaaaagtaTTTGACCCTCTACATCTAATAAATTGCTTgtgcaacaactgcaatcaagctttatcGATAACTGGTAACATGTGGAGGAATTTTAGGATTTTCCAGCTTAAACTTCCTGTTTAAGATCTTCCACAGCATCTCATTAATCAGACTTAATAAACTAGACCACTcgaaaaccttcatttagttttatttatttttaagtcattcaAAGGTggactttttgtgtgtgttttgggtcattgtcctgctgcagagcccaagtacatctgagcttgaggtcacttAGGgacagatggccggatattcagtctccttcaggattttctgataagcttccatctattacagcaagttaaagtccaacagccccagaccatcacaccatgacactaccaccaccatgttttacatcatTCAGTATGATTttagttctttaacaccttccaaaaagttccactttcgTCTCGTCAGTCCTGTAAAGAATATTaacccaaagttctggagatatacagtaatatacatcAGGAGCAGACCTGGGCATTGTTTGGTCGCGTGAGATTGTTGgtaaattagaagggaaaagTAAAACTGCGAGTCGCGCTATCCACAATAAAAAACTTTGTGCACGTCTAAACGGTGTATTACGGTAGCCTCGTGCACAGTGGAGCTAGAGGAGCGGAGGCTCCAGCTTCTTTTTTGAGCAGAAGCGAAttttacagctaaataaacagaatttacCAGATCTAATTACAAATATACACCATAAATACCACTACCTATCTGTAAAACATTCTTTATCAAATGATGGCACAAAAGTTTTATTAACAGTTAACATTGTTaactgtattcataatgtatgtttccagtaataTTACTGAAAAATAAGAGTTAGGAGTCTTATAAAACaggaaaattaaagggttaTTATTTCACACCATTAAAttcttaaagatttttttctcatgtattcaaaatatatgtttcaagtgatattactgtatcattttggaataaTGCGATACCAAACTTCTATATCtataggaaaaaatatatatatatgtatatatatatatatacatatatatatatacgtatatatatatatatttagttgttCATAAAATAGATTTGATCAGAATTGTGTGCTGTCCTTCACATTTCCACATCAGATGTTCAGCCTGACTTTAATGCACTTGTTCAAGCCCAAAACaggcttttcttttttcttttactgaaCAAACGtacaaatgcatttattgcattttttttgtaggaAATGATGCTGGTCTTTTGAAAaacgttttagttttttgtttgtaaatttATGTAGCTGATAGTGTagctacactatatatacagttgAGGACGATATTATATAGCCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17185 lncRNA downstream 3310 22112579 ~ 22130047 (-) True G12795
TU17181 lncRNA downstream 45994 22086817 ~ 22087363 (-) True G12792
TU17180 lncRNA downstream 67001 22065980 ~ 22066356 (-) True G12791
TU17178 lncRNA downstream 68573 22063626 ~ 22064784 (-) True G12789
TU17169 lncRNA downstream 141616 21990721 ~ 21991741 (-) False G12782
TU17198 lncRNA upstream 1241 22141079 ~ 22234862 (-) True G12803
TU17218 lncRNA upstream 81361 22221199 ~ 22230856 (-) True G12813
TU17262 lncRNA upstream 216006 22355844 ~ 22365170 (-) True G12834
TU17277 lncRNA upstream 329537 22469375 ~ 22470901 (-) True G12849
TU17286 lncRNA upstream 336466 22476304 ~ 22519510 (-) True G12854
XM_022675103.1 mRNA downstream 74521 21984434 ~ 22058836 (-) True LOC103036974
XM_015604418.2 mRNA downstream 380462 21747420 ~ 21752895 (-) False LOC103032573
XM_015604417.2 mRNA downstream 380463 21747420 ~ 21752894 (-) True LOC103032573
XM_022675047.1 mRNA downstream 413073 21706213 ~ 21720284 (-) False LOC107197401
XM_022675122.1 mRNA upstream 1932 22141770 ~ 22164569 (-) True scn3b
XM_022675126.1 mRNA upstream 1932 22141770 ~ 22164549 (-) False scn3b
XM_022675116.1 mRNA upstream 1932 22141770 ~ 22164548 (-) False scn3b
XM_022675114.1 mRNA upstream 39578 22179416 ~ 22191537 (-) True LOC103032877
XM_022675110.1 mRNA upstream 65224 22205062 ~ 22247459 (-) False LOC103037608
TU17143 other downstream 138606 21993807 ~ 21994751 (-) True G12767
trnak-cuu other downstream 1158203 20975082 ~ 20975154 (-) True trnak-cuu
TU16104 other downstream 2050915 19998440 ~ 20082442 (-) True G11917
TU16077 other downstream 2331144 19785981 ~ 19802213 (-) True jam3
trnap-cgg other downstream 2894380 19238906 ~ 19238977 (-) True trnap-cgg
XR_002650646.1 other upstream 1399419 23539257 ~ 23553970 (-) False LOC111193708
XR_002650645.1 other upstream 1401496 23541334 ~ 23553970 (-) True LOC111193708
TU17895 other upstream 1644633 23784471 ~ 23803818 (-) False LOC103035686
TU17900 other upstream 1764345 23904183 ~ 23908771 (-) True G13322
TU18307 other upstream 3333896 25473734 ~ 25494452 (-) True G13630

Expression Profile