RNA id: TU17149


Basic Information

Item Value
RNA id TU17149
length 2292
lncRNA type inter_gene
GC content 0.36
exon number 3
gene id G12769
representative False

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 21977341 ~ 21982608 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ggaggagaacatgatgccaagatgcatgaaaaaactgtgattaaaaaacaccagggttattctatcaaatattgatttctcaactcttaaaactttatgaatatgaacttgtttttttttcttttgcattatttgaggtctgaaagctctgcatcttttttgttatatgagccatttctcatttttgttattttctgtaaataaatgctctaaattagaatatttttattaggaatttgggagaaatgttgtctgtagtttatagaataaaacaacaatgttcattttactcaaacataaacctataaatagcaaaatcagagaaactgattcagaaactgaagtgctctcttcatatttttccagagctgtttatggtaAATTCAGTAGAGGGACAGCAGAAGGTGTGGCCAGTGGCCCATTTAATGAGGGTTAAAATCACTGTTCCATTTTACAAACTCCTACAAACCAAACTGCAGAAAAATGCAGATTCAAGAGGATCTGTTTCCATCTACATTATTatcatgtctttatttttttgtgatttagatttttttagctatatattttatagagattttgcACTGAATAGATGGATAGAAAGTAATATCATGTAATATCATGCCTGTATATTTTGTTACCAACTTTTAGAGCTTTTTTATTCCCATTATGAAAAATTTTAAGTCTGTAGTTTTGTCTGGATTGgccattttttgtaaaaaactaaatcagtggaattctctctcctcttttaatAAAGATAAATGAATGGATGATTGCTAAACTCGACAGTattgctaattttttttttatttttactcaagcAATCAgatgaaagtaaagtaaatttcGATCATAATGCAGTTTTCATGCCGGTGTTAACATACAGCAGTGTAATGCTTAATAAgaatgaatgttttattttttaagctgCAAAACAAATGTGCTGAAgcttaaaaaaatgcagattattatttatatacactCACCCGCCACTTTACTAGATACAGCTGTCCAACTGTTTGTTAAAGCAAATGttgaatcagccaatcacatggcagcaactcaatgcatttaggcatgtagaagatctgctgcagttcaaaccgAGCATCAGAGAGAGACGTGACTCGGACTCttgaccaaagacttgagacttgactcagactcgtgACTAAAGACTTAAGACTTAACTCAGACTTGTgatcaaagacttgagacttgactcggactcgtgaccaaagacttgaaacttgacTGGGACTCGTgatcaaagacttgagacttgactcagactcgtgaccaaagacttgaaacttgacTGGGACTCGTgatcaaagacttgagacttCACTCAGACTcatgaccaaagacttgagacttcaCTCAGACTcatgaccaaagacttgagacttgactcgggctcgtgaccaaagacttgtgacttgacccAGACTTGTgatcaaagacttgagacttgactcagactcatgACTAAAGACTTGTGAACATCTCTGCCGTGTCATATCTGAGAATCTCTGAGGAACGTTTCCAGTAGCTTGTTGAATCGATGCCACGaaggattaaggcagttctgaaggTAAAAGAGCCCAGGTTCAACCTGATACTAGCAAGTACtagtgtacctaataaagtggccggtgagtgtATATCCCTGTTTGGTTGCATTGTTCAAATCAAAATCTAATTACAGGAATCCTCCACACACAATCGTTTTAATGAAGTGAACGGCAGCACTGTTTAAAAGCAATAGTGCGAATTCCAGCAAACTGCTGATTGTCATATCTGTAGTACAGCTGATCATTCTGTCTCGAGCATCACGGTGGAGATTAAGGTGTTTAATGCTTGGAAGAAGCCAAGAGAAGTGATGTAAAGACCACTGGAGCTTTTCATCAACCGagtctgcaaaaaaaacaaaccagccACGCAGTTCTAACTTAACATTTGCTTTCTTAAGCCTTTCatgcttttttattgatttattcatttagtttAAATACGGCATCTGTTGAATGTGTTAAGCCTGCTGTGATGACGTAGCGCATGTTATGTTCTCATGAAGCTGTATGTTGCACTTTGACAGAAGCTGATCAAATTAAtctgtaaaatctgtaaaagaTAAATCATGTAATCATggaataaattatataatatgaagaaaaaatgaCTGCATATCATCATTTGGTTCTATGGTGAACTGTTTGTTCATCACACTAATGCCTGGCCCACACTACAGGATTAAATGTTTGTTACAGGGTTTAATCTTTGTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17146 lncRNA downstream 11975 21937785 ~ 21967799 (-) True G12768
TU17123 lncRNA downstream 127714 21797969 ~ 21852060 (-) True G12749
TU17124 lncRNA downstream 127714 21797969 ~ 21852060 (-) False G12749
TU17125 lncRNA downstream 127714 21797969 ~ 21852060 (-) False G12749
TU17120 lncRNA downstream 224311 21754671 ~ 21755463 (-) True G12746
TU17164 lncRNA upstream 8113 21990721 ~ 21991991 (-) False G12782
TU17165 lncRNA upstream 8113 21990721 ~ 21991741 (-) True G12782
TU17167 lncRNA upstream 8113 21990721 ~ 21991741 (-) False G12782
TU17168 lncRNA upstream 8113 21990721 ~ 21991991 (-) False G12782
TU17169 lncRNA upstream 8113 21990721 ~ 21991741 (-) False G12782
XM_015604418.2 mRNA downstream 226879 21747420 ~ 21752895 (-) False LOC103032573
XM_015604417.2 mRNA downstream 226880 21747420 ~ 21752894 (-) True LOC103032573
XM_022675047.1 mRNA downstream 259490 21706213 ~ 21720284 (-) False LOC107197401
XM_022675046.1 mRNA downstream 259490 21706213 ~ 21720284 (-) True LOC107197401
XM_022675039.1 mRNA downstream 280735 21610154 ~ 21699039 (-) False LOC103031934
XM_022675103.1 mRNA upstream 1826 21984434 ~ 22058836 (-) True LOC103036974
XM_022675122.1 mRNA upstream 159162 22141770 ~ 22164569 (-) True scn3b
XM_022675126.1 mRNA upstream 159162 22141770 ~ 22164549 (-) False scn3b
XM_022675116.1 mRNA upstream 159162 22141770 ~ 22164548 (-) False scn3b
XM_022675114.1 mRNA upstream 196808 22179416 ~ 22191537 (-) True LOC103032877
trnak-cuu other downstream 1004620 20975082 ~ 20975154 (-) True trnak-cuu
TU16104 other downstream 1897332 19998440 ~ 20082442 (-) True G11917
TU16077 other downstream 2177561 19785981 ~ 19802213 (-) True jam3
trnap-cgg other downstream 2740797 19238906 ~ 19238977 (-) True trnap-cgg
TU15837 other downstream 2868202 19108713 ~ 19111572 (-) True G11719
TU17143 other upstream 11199 21993807 ~ 21994751 (-) True G12767
XR_002650646.1 other upstream 1556649 23539257 ~ 23553970 (-) False LOC111193708
XR_002650645.1 other upstream 1558726 23541334 ~ 23553970 (-) True LOC111193708
TU17895 other upstream 1801863 23784471 ~ 23803818 (-) False LOC103035686
TU17900 other upstream 1921575 23904183 ~ 23908771 (-) True G13322

Expression Profile