RNA id: TU17881


Basic Information

Item Value
RNA id TU17881
length 884
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G13311
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 23753551 ~ 23754490 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tagatagacaaacaaAGACAGTCAGATAgacagacagagataaacagatatatagacagacaTAGAACATGAACTAGCACTGGAATGtagctctgcatcatttaaggtggaacaaaaataataagaagCTAACGTCTGCTCCAATGTAATAATGTTTATGTCATATATTGGCTCATTTAtcagtctaaagtgctgccactatgattgggagatcgctggtttgaatccctaTCATGCAGtttgccagagccccgagagagcacagttgttcttgctctctctctgggtgggtacagtacagtagatggcgctcttttctttcccttcatcactcctagggtgatgtggatcagcacaaggctgcgtctgtgagctgatgtatcagaaccgagtcgctgcgctttcctccgagcgttagcgctgtgatgctactcggcaatgctacagcatcagcagcagctcaaaaagaggcggagtctgacttcacatgtatcagaggaggcacagaaaaaatctgatttgagtctctTCAGTCTGGAAATGTAAACGTTGCCTCAGAGCCAGTCTGACTCAGCTGTACCATCAGATCAGCTTCATACAAAGAGACGCACATTTCTCTAAAGACGAATCTGCTCCTGAAGGAAGTGGCCTCCATTCCTTCCCCATAATCCTCTGCTCCCACACCCACACTTTGCTTTTTCTCAACACAGGATATTACATGTAGGTCAAATGTTCTACTCACATTCATGCAGACTACTgctgaaggaacacataaggaatcatgtagtaacttaaaagtggcagtctgtagtatttagtttctaaactgaaagcagaagcatgtTTGATGGTAGCAGTGTgctgaaccaccatccctgctaatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17876 lncRNA downstream 1032 23750470 ~ 23752519 (-) True G13307
TU17871 lncRNA downstream 29088 23674210 ~ 23724463 (-) True G13303
TU17874 lncRNA downstream 32482 23720584 ~ 23721069 (-) True G13305
TU17850 lncRNA downstream 43014 23610245 ~ 23710537 (-) True G13296
TU17860 lncRNA downstream 110659 23614130 ~ 23642892 (-) True G13298
TU17890 lncRNA upstream 17158 23771648 ~ 23771966 (-) True G13317
TU17905 lncRNA upstream 142429 23896919 ~ 23903053 (-) True G13325
TU17907 lncRNA upstream 161223 23915713 ~ 23916288 (-) True G13327
TU17913 lncRNA upstream 234445 23988935 ~ 23989467 (-) True G13330
TU17915 lncRNA upstream 238229 23992719 ~ 24071966 (-) False G13331
XM_022675241.1 mRNA downstream 28783 23650417 ~ 23724768 (-) True LOC103035063
XM_022675222.1 mRNA downstream 199586 23547242 ~ 23553965 (-) False LOC111193708
XM_022677923.1 mRNA downstream 1470449 22269223 ~ 22283102 (-) True LOC111194286
XM_022677922.1 mRNA downstream 1484323 22258919 ~ 22269228 (-) True LOC111194282
XM_022675106.1 mRNA downstream 1508251 22205062 ~ 22245300 (-) True LOC103037608
XM_022675250.1 mRNA upstream 12537 23767027 ~ 23775316 (-) True c1qtnf5
XM_022675334.1 mRNA upstream 36241 23790731 ~ 23853298 (-) True LOC103035686
XM_022675259.1 mRNA upstream 105263 23859753 ~ 23895075 (-) True ube4a
XM_022675312.1 mRNA upstream 154921 23909411 ~ 23927376 (-) True LOC103036322
XM_022675270.1 mRNA upstream 174325 23928815 ~ 23947378 (-) True nlrx1
XR_002650646.1 other downstream 199581 23539257 ~ 23553970 (-) False LOC111193708
XR_002650645.1 other downstream 199581 23541334 ~ 23553970 (-) True LOC111193708
TU17143 other downstream 1758800 21993807 ~ 21994751 (-) True G12767
trnak-cuu other downstream 2778397 20975082 ~ 20975154 (-) True trnak-cuu
TU16104 other downstream 3671109 19998440 ~ 20082442 (-) True G11917
TU17895 other upstream 29981 23784471 ~ 23803818 (-) False LOC103035686
TU17900 other upstream 149693 23904183 ~ 23908771 (-) True G13322
TU18307 other upstream 1719244 25473734 ~ 25494452 (-) True G13630
TU18373 other upstream 1970423 25724913 ~ 25726156 (-) True G13677
TU18474 other upstream 2252752 26007242 ~ 26016396 (-) False nars2

Expression Profile