RNA id: TU17907


Basic Information

Item Value
RNA id TU17907
length 548
lncRNA type intronic
GC content 0.45
exon number 2
gene id G13327
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 23915713 ~ 23916288 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGGGTTGATTTGgctaattaccaacacctgctATGAACATCTTAAAAGCAGAgccaaccagccactcggcgctggatctttgaagctcgtgagagcgaatctatgcccgaTTTTCGAGCGAGCCTcggctctttttctcttttcttccctgCTATCCCCTTTGGAGAGAGCATTGATCAGCATCGCTGGCGTGCCTCTCCCGCATAAGTATCTTCCTctatccctttcctctctctcgaGAGTCTGCTGGAGATAGAGCTGTGTgctctctcctgtgtgtgtgtgtgtgtgtgtcagccgCGAGGCACGCGGTTTTGCTCACCTAGTCTCCCTCCCGCTGTTCCTCCCCTCTGTGGTGGAACAGCATTTAATCCAAAAGCacctcagttcagtttgttttctttggaagccattttgtttagttaatccttCACCTCATCTCATAAGAGGTAGCCGTAGCTTCCACGGCGAGCCTTGTTTACAATTCTCcccttctctttcactcacgctaGGCGTGAGGTTTTGTTTTCCACGCCGTTTTCactctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17905 lncRNA downstream 12660 23896919 ~ 23903053 (-) True G13325
TU17873 lncRNA downstream 94843 23715440 ~ 23820870 (-) True G13304
TU17890 lncRNA downstream 143747 23771648 ~ 23771966 (-) True G13317
TU17881 lncRNA downstream 161223 23753551 ~ 23754490 (-) True G13311
TU17876 lncRNA downstream 163194 23750470 ~ 23752519 (-) True G13307
TU17913 lncRNA upstream 72647 23988935 ~ 23989467 (-) True G13330
TU17915 lncRNA upstream 76431 23992719 ~ 24071966 (-) False G13331
TU17914 lncRNA upstream 83796 24000084 ~ 24019447 (-) True G13331
TU17926 lncRNA upstream 192364 24108652 ~ 24145236 (-) True G13341
XR_002650656.1 lncRNA upstream 561430 24477718 ~ 24486728 (-) True LOC111193726
XM_022675259.1 mRNA downstream 20638 23859753 ~ 23895075 (-) True ube4a
XM_022675334.1 mRNA downstream 62415 23790731 ~ 23853298 (-) True LOC103035686
XM_022675250.1 mRNA downstream 140397 23767027 ~ 23775316 (-) True c1qtnf5
XM_022675241.1 mRNA downstream 190945 23650417 ~ 23724768 (-) True LOC103035063
XM_022675222.1 mRNA downstream 361748 23547242 ~ 23553965 (-) False LOC111193708
XM_022675270.1 mRNA upstream 12527 23928815 ~ 23947378 (-) True nlrx1
XM_022675273.1 mRNA upstream 15851 23932139 ~ 23947378 (-) False nlrx1
XM_007258874.3 mRNA upstream 15851 23932139 ~ 23947378 (-) False nlrx1
XM_007258873.3 mRNA upstream 15851 23932139 ~ 23947378 (-) False nlrx1
XM_022677939.1 mRNA upstream 651303 24567591 ~ 24687178 (-) True brip1
TU17900 other downstream 6942 23904183 ~ 23908771 (-) True G13322
TU17895 other downstream 111895 23784471 ~ 23803818 (-) False LOC103035686
XR_002650646.1 other downstream 361743 23539257 ~ 23553970 (-) False LOC111193708
XR_002650645.1 other downstream 361743 23541334 ~ 23553970 (-) True LOC111193708
TU17143 other downstream 1920962 21993807 ~ 21994751 (-) True G12767
TU18307 other upstream 1557446 25473734 ~ 25494452 (-) True G13630
TU18373 other upstream 1808625 25724913 ~ 25726156 (-) True G13677
TU18474 other upstream 2090954 26007242 ~ 26016396 (-) False nars2
TU18746 other upstream 2761993 26678281 ~ 26698793 (-) False G13960
TU18787 other upstream 2913733 26830021 ~ 26833598 (-) False fam109a

Expression Profile