RNA id: TU17914


Basic Information

Item Value
RNA id TU17914
length 253
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G13331
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 23992719 ~ 24071966 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aagttcatattcataaagttttaagagttcagaaataatcaatatttggtggaataacccttgtttttaatcagtttttttcatgcatcttggcatcatgttctcctccaccagtcttacacactgcttttggataactttatgctgctttactcctggtgtaaaaattcaagcagttcagtttggtggtttgatggtttgtgatcatccatcttcctcttgattatattccagaggttttcaatttggtaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17913 lncRNA downstream 10617 23988935 ~ 23989467 (-) True G13330
TU17907 lncRNA downstream 83796 23915713 ~ 23916288 (-) True G13327
TU17905 lncRNA downstream 97031 23896919 ~ 23903053 (-) True G13325
TU17890 lncRNA downstream 228118 23771648 ~ 23771966 (-) True G13317
TU17881 lncRNA downstream 245594 23753551 ~ 23754490 (-) True G13311
TU17926 lncRNA upstream 89205 24108652 ~ 24145236 (-) True G13341
XR_002650656.1 lncRNA upstream 458271 24477718 ~ 24486728 (-) True LOC111193726
TU17954 lncRNA upstream 458456 24477903 ~ 24486540 (-) False LOC111193726
TU17991 lncRNA upstream 645146 24664593 ~ 24665038 (-) True G13390
TU17994 lncRNA upstream 688039 24707486 ~ 24712985 (-) True G13393
XM_022675270.1 mRNA downstream 52706 23928815 ~ 23947378 (-) True nlrx1
XM_022675273.1 mRNA downstream 52706 23932139 ~ 23947378 (-) False nlrx1
XM_007258874.3 mRNA downstream 52706 23932139 ~ 23947378 (-) False nlrx1
XM_007258873.3 mRNA downstream 52706 23932139 ~ 23947378 (-) False nlrx1
XM_022675312.1 mRNA downstream 72708 23909411 ~ 23927376 (-) True LOC103036322
XM_022677939.1 mRNA upstream 548144 24567591 ~ 24687178 (-) True brip1
XM_007258876.3 mRNA upstream 670628 24690075 ~ 24699460 (-) True ppm1d
XM_007236781.3 mRNA upstream 967619 24987066 ~ 25003911 (-) True pgm2l1
XM_022675374.1 mRNA upstream 987545 25006992 ~ 25038802 (-) True LOC103033355
XM_015602314.2 mRNA upstream 1031513 25050960 ~ 25056101 (-) False spcs2
TU17900 other downstream 91313 23904183 ~ 23908771 (-) True G13322
TU17895 other downstream 196266 23784471 ~ 23803818 (-) False LOC103035686
XR_002650646.1 other downstream 446114 23539257 ~ 23553970 (-) False LOC111193708
XR_002650645.1 other downstream 446114 23541334 ~ 23553970 (-) True LOC111193708
TU17143 other downstream 2005333 21993807 ~ 21994751 (-) True G12767
TU18307 other upstream 1454287 25473734 ~ 25494452 (-) True G13630
TU18373 other upstream 1705466 25724913 ~ 25726156 (-) True G13677
TU18474 other upstream 1987795 26007242 ~ 26016396 (-) False nars2
TU18746 other upstream 2658834 26678281 ~ 26698793 (-) False G13960
TU18787 other upstream 2810574 26830021 ~ 26833598 (-) False fam109a

Expression Profile