RNA id: TU17994


Basic Information

Item Value
RNA id TU17994
length 830
lncRNA type inter_gene
GC content 0.58
exon number 6
gene id G13393
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 24707486 ~ 24712985 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctcttctgctgctgctgggttCTGGTGTGCCCTCTCCACCTACAGCTGGGTCCTCAGTAAACATTTTCTCCGTTTTCTGGGCATCCCATTCTCGCCTCCATTGGCCGGTGGCATTTCGGTGACGAGCGAGTCTCTCCTCATCTATCTGCTCTCGCTCCTTTTTCCAGCGCAGGTACTCCGCCCGCTCTCGACCGGTCATAGACAGAGTCATATCCATCGAGCCTTTCCCTCCGGGCCGCCGACTCGTCCACTCTTTCTCCACCTCGGCTCCAGTCTTCACGTTATCGAAGTCTAGTCCCCCCCAGTTGCGGACGTGTCTGCGGCTTCCCTCTTTGCGATCGATGTCTGGAATGGGTCCGCTGCGCCGCGGATCATCTAGAAAGTTCCGGATTGGATTTTTCTCTCCATCGGCCCTTTGACCTCTCTCATACTCAGCGATCTTCTCCATCTCTTCATTCATCTTTTCAATGTTCTGCCTCCTCTTCTCTTCCCACtcCTTCGACTTTCTATCAGACCCAGCACCGCCCTGTTGCAGCCCTCctcttccttctcctcctcttccttctcctcctcttccttcTCCTCTTCGTCCTACCCAGGGGCGTCCCTCTCCCCCGTCTCCTTCTCGGGGTGGTCTGTCTGCTCTCACATCTCCTTTATCTGGGCGTGGTTCTCTCCTTTCAGAGCGCGGGCCTCCCCCACGCTGCCCGCCTCTGTTCAGCCGACCGGACCCTGCCCTGCGGGGGGGACTGTCTCCATGAGGCTGCAGGCCGTCCCCGTCCTCCGGGCCATGTTCAACACGATGAGGCGGTGGCTTCCTGTCATTTACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17991 lncRNA downstream 42448 24664593 ~ 24665038 (-) True G13390
XR_002650656.1 lncRNA downstream 220758 24477718 ~ 24486728 (-) True LOC111193726
TU17954 lncRNA downstream 220946 24477903 ~ 24486540 (-) False LOC111193726
TU17926 lncRNA downstream 562250 24108652 ~ 24145236 (-) True G13341
TU17915 lncRNA downstream 635520 23992719 ~ 24071966 (-) False G13331
TU18027 lncRNA upstream 62823 24775808 ~ 24809071 (-) True G13419
TU18035 lncRNA upstream 255307 24968292 ~ 24968831 (-) True G13427
TU18063 lncRNA upstream 278936 24991921 ~ 24993523 (-) True G13444
TU18099 lncRNA upstream 330255 25043240 ~ 25043516 (-) True G13476
TU18100 lncRNA upstream 332121 25045106 ~ 25045309 (-) True G13477
XM_007258876.3 mRNA downstream 8026 24690075 ~ 24699460 (-) True ppm1d
XM_022677939.1 mRNA downstream 20308 24567591 ~ 24687178 (-) True brip1
XM_022675270.1 mRNA downstream 760108 23928815 ~ 23947378 (-) True nlrx1
XM_022675273.1 mRNA downstream 760108 23932139 ~ 23947378 (-) False nlrx1
XM_007258874.3 mRNA downstream 760108 23932139 ~ 23947378 (-) False nlrx1
XM_007236781.3 mRNA upstream 274081 24987066 ~ 25003911 (-) True pgm2l1
XM_022675374.1 mRNA upstream 294007 25006992 ~ 25038802 (-) True LOC103033355
XM_015602314.2 mRNA upstream 337975 25050960 ~ 25056101 (-) False spcs2
XM_007236779.3 mRNA upstream 337975 25050960 ~ 25055975 (-) False spcs2
XM_007236780.3 mRNA upstream 349702 25062687 ~ 25072518 (-) True rnf169
TU17900 other downstream 798715 23904183 ~ 23908771 (-) True G13322
TU17895 other downstream 903668 23784471 ~ 23803818 (-) False LOC103035686
XR_002650646.1 other downstream 1153516 23539257 ~ 23553970 (-) False LOC111193708
XR_002650645.1 other downstream 1153516 23541334 ~ 23553970 (-) True LOC111193708
TU17143 other downstream 2712735 21993807 ~ 21994751 (-) True G12767
TU18307 other upstream 760749 25473734 ~ 25494452 (-) True G13630
TU18373 other upstream 1011928 25724913 ~ 25726156 (-) True G13677
TU18474 other upstream 1294257 26007242 ~ 26016396 (-) False nars2
TU18746 other upstream 1965296 26678281 ~ 26698793 (-) False G13960
TU18787 other upstream 2117036 26830021 ~ 26833598 (-) False fam109a

Expression Profile