RNA id: TU18035


Basic Information

Item Value
RNA id TU18035
length 540
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G13427
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 24968292 ~ 24968831 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTTTCATTTAAGTAAAAggtttgagttgatacttttttttaaaccccagtatctatacttctacttgagtgatgaatgtgaatacttttgacacccttGCTACTAACGCCTGAATTATTAGTGTATTAAATGCACTGAAAGCTGTATGAAACGCGTCTGTCGGCGCGATGTTAACAGGCGATTGAGGCAAATCTAACCTAAATACCTTAGCTTAAGATCATGGATTACATAGATCCCTTTAGACATTAAACAACACTGAACTAAACTGGAGACATATCAAAGCTGCACTATGTTACGTGCTTAACCTGTGTCCACAAATAGAGTTTACCTTTCTGAAAGCCTTGGTGGTGAGAGAAATGTCTCATAAATGTTCCCTGTGTTTATGTTCCGCTGATTTTATCACACATAGTTTGtgctgagttttgttctccatggcagcgcagctgaactttttccagtaatatttattacggttagcgggagagacgctgtgtgaatcattGTAGCCTGGGGTGAGTGTGTGCGGATCGGGGGAACCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18027 lncRNA downstream 159221 24775808 ~ 24809071 (-) True G13419
TU17994 lncRNA downstream 255307 24707486 ~ 24712985 (-) True G13393
TU17991 lncRNA downstream 303254 24664593 ~ 24665038 (-) True G13390
XR_002650656.1 lncRNA downstream 481564 24477718 ~ 24486728 (-) True LOC111193726
TU17954 lncRNA downstream 481752 24477903 ~ 24486540 (-) False LOC111193726
TU18063 lncRNA upstream 23090 24991921 ~ 24993523 (-) True G13444
TU18099 lncRNA upstream 74409 25043240 ~ 25043516 (-) True G13476
TU18100 lncRNA upstream 76275 25045106 ~ 25045309 (-) True G13477
TU18093 lncRNA upstream 82143 25050974 ~ 25055701 (-) True spcs2
TU18104 lncRNA upstream 92879 25061710 ~ 25062064 (-) True G13481
XM_007258876.3 mRNA downstream 268832 24690075 ~ 24699460 (-) True ppm1d
XM_022677939.1 mRNA downstream 281114 24567591 ~ 24687178 (-) True brip1
XM_022675273.1 mRNA downstream 1020914 23932139 ~ 23947378 (-) False nlrx1
XM_007236781.3 mRNA upstream 18235 24987066 ~ 25003911 (-) True pgm2l1
XM_022675374.1 mRNA upstream 38161 25006992 ~ 25038802 (-) True LOC103033355
XM_015602314.2 mRNA upstream 82129 25050960 ~ 25056101 (-) False spcs2
XM_007236779.3 mRNA upstream 82129 25050960 ~ 25055975 (-) False spcs2
XM_007236780.3 mRNA upstream 93856 25062687 ~ 25072518 (-) True rnf169
TU17900 other downstream 1059521 23904183 ~ 23908771 (-) True G13322
TU17895 other downstream 1164474 23784471 ~ 23803818 (-) False LOC103035686
XR_002650646.1 other downstream 1414322 23539257 ~ 23553970 (-) False LOC111193708
XR_002650645.1 other downstream 1414322 23541334 ~ 23553970 (-) True LOC111193708
TU17143 other downstream 2973541 21993807 ~ 21994751 (-) True G12767
TU18307 other upstream 504903 25473734 ~ 25494452 (-) True G13630
TU18373 other upstream 756082 25724913 ~ 25726156 (-) True G13677
TU18474 other upstream 1038411 26007242 ~ 26016396 (-) False nars2
TU18746 other upstream 1709450 26678281 ~ 26698793 (-) False G13960
TU18787 other upstream 1861190 26830021 ~ 26833598 (-) False fam109a

Expression Profile