RNA id: TU18319


Basic Information

Item Value
RNA id TU18319
length 1798
lncRNA type inter_gene
GC content 0.42
exon number 5
gene id LOC111193737
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 25514715 ~ 25569523 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAGTCCAAAGCCTCGTTGTGTTTTATGGGGAACAGTTATTAATATTGGGTCAAATAATCCAGTATTTCTTCACTCTGGTGCTGAAGGTCCGCTGCGCTGCTCTTTAAGTTACTGTGTTTCCCCTTTACTCTGTTTTCATTTAAAGCCCCTCAGTCTTAAAACAGCGGCACTAGCGGGCCTCCAGCACCGATAGTGATTATTACCCTGCCGGATTAGATTAGAGCAGCACGGCGGAGCTCTGTAAGTCCCGGTGACGCTGCAACTGGATTTTATAAAGATATGAGAAAAGAATGCTTTCGTCGTGGATTTAACATGAAAAGGCCCAGTTCCAAAAGACACAACATCCTCAGTGTCCTGGAGCTCCAGCTGAAGCACTGGCCACTCCACCTTCTCCATCCCCACCCAAAAGAGGTACTTCTAAGGCAGCTAGTGATTGAGGTCCATGCCAGAGGGGTTCTGCACTGTGAGGTCAAGCCATAGAAGAACATCCTGGTTCAGATGTACAGTTAGGAACCACGCCTTCATCTTCTGTTCTTCTGGACCTTCTTCATGAGTGGTTTACCCATGAGGCCAAATCCTCCACAGTGTTGCAGATAGGAATCAtcctgctgtgtgtgagaggtgacCCTTCAACACCAGCACGGAGATCACCTCAAAGTAGTCTCAGATCATCTCTCCACCATCTGCTCTATGACCCCTGGCTAAGTATACACCACGACACAGCCACCACATCAGGCACACCTCAGTCaggtaccatataaaacaataataataataatttaaaaaaatctgtattttcaaTCTCTAGTTTAGAGAGTTCTctagtagagctgggcgattaatcgattttatcgataaATTCGAATTTATAGTTAAGgacaatgtgtttttatgaaaatcgattttctctgagttttcttTTTCACCACAGACGCTCCTCTGTGGGCACAGAGTGAGCTTAGCTAGCTCCCTCCATACCTCCCTCCCTCCAGCGCGCACCCCCTGcccctccctcactccctcccttgcacgcacaaacacacatgtgcacacacacacacacacatacacaaaacacaTGACGGCGGAGCTTAAGAGCAACTAGCTCCGTGATCTGGAGTTGGTTCGGTTTTGCGGCGTCGGACGTAGACCAAACAGGTCCTCGCTGTAAGGTGAACCAATTTATCACTATACCTTAAACAGAACCATGTAGCGGAGTGGGAGAAGTGCTGCTACCATAGGAATgaacgcagcagcagcaccagttCACCATTCAAAGTTAAACAAGGAACTGTCCCTGGCACATCTTCCAACCGTGTACCAGGTCTTGTATGCACTACAAGTTAAGATGTTTTGCATATTCATGAGAAAAGATCTCATTTTATAGAACACTGGCACTTATTTAAAtgctttgttttgcaattctAGCCCAATAGGGAAAAGTATTTACTTAAGAGCATataaattgtacttgttttctattgtctactttgtaagttttatcaaaaaagggcaccattttatttatttctatttgtttttaagggtgtgtttatttatttatttattttttaagtttgagggtgcattgtgtcagtacctaaactatgttggagaaagctttctaaaagtcactagatgttctcactgtttacaatagttttttttgcttgtttctggttgcactttaaccacaaatggaacattttaagtgaaaacaaattaaataagaactagtttttaaccatttctttatcatctttagtttgatttttagtagggggaaaaaatcgattta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18308 lncRNA downstream 7752 25500995 ~ 25506963 (-) True G13631
TU18305 lncRNA downstream 8671 25414532 ~ 25506044 (-) True G13629
TU18314 lncRNA downstream 11865 25502566 ~ 25502850 (-) True G13637
TU18306 lncRNA downstream 17757 25473734 ~ 25496958 (-) False G13630
TU18303 lncRNA downstream 46077 25411408 ~ 25468638 (-) True G13628
TU18327 lncRNA upstream 3655 25523787 ~ 25524296 (-) False LOC111193738
TU18382 lncRNA upstream 235809 25755941 ~ 25758034 (-) True G13685
TU18477 lncRNA upstream 451273 25971405 ~ 25975983 (-) True G13769
TU18473 lncRNA upstream 482199 26002331 ~ 26006680 (-) False nars2
TU18522 lncRNA upstream 791303 26311435 ~ 26311750 (-) True G13801
XM_022675398.1 mRNA downstream 288900 25219209 ~ 25225815 (-) True LOC111193727
XM_007236780.3 mRNA downstream 442197 25062687 ~ 25072518 (-) True rnf169
XM_015602314.2 mRNA downstream 458614 25050960 ~ 25056101 (-) False spcs2
XM_007236779.3 mRNA downstream 458740 25050960 ~ 25055975 (-) False spcs2
XM_022675374.1 mRNA downstream 475913 25006992 ~ 25038802 (-) True LOC103033355
XM_022675494.1 mRNA upstream 3700 25523832 ~ 25524603 (-) True LOC111193738
XM_007236756.3 mRNA upstream 123214 25643346 ~ 25660463 (-) True LOC103046310
XM_022675523.1 mRNA upstream 153740 25673872 ~ 25680952 (-) False nudt8
XM_015602309.2 mRNA upstream 153805 25673937 ~ 25680956 (-) True nudt8
XM_007236774.3 mRNA upstream 308791 25828923 ~ 25905572 (-) True maml2
TU18307 other downstream 20263 25473734 ~ 25494452 (-) True G13630
TU17900 other downstream 1605944 23904183 ~ 23908771 (-) True G13322
TU17895 other downstream 1710897 23784471 ~ 23803818 (-) False LOC103035686
XR_002650646.1 other downstream 1960745 23539257 ~ 23553970 (-) False LOC111193708
TU18373 other upstream 204781 25724913 ~ 25726156 (-) True G13677
TU18474 other upstream 487110 26007242 ~ 26016396 (-) False nars2
TU18746 other upstream 1158149 26678281 ~ 26698793 (-) False G13960
TU18787 other upstream 1309889 26830021 ~ 26833598 (-) False fam109a
TU18929 other upstream 1378873 26899005 ~ 26902713 (-) True G14113

Expression Profile