RNA id: TU18373


Basic Information

Item Value
RNA id TU18373
length 653
RNA type TUCP
GC content 0.71
exon number 3
gene id G13677
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 25724913 ~ 25726156 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTCACTGAGCAATCTAGCCAGTTGCTCATCCTCCTCCAGCTGCCTGTTTTCCTGCATCCTCCTCTCCTCAGCTATTCGCTCCTCTTCTTCAGCCAGGAGCCGCTGGATGTATTCCTCACTTGCCCTCCTCTCTGCCTCCTCCATGGCTTGCTTCTCTGCCATAACCTTGCTAACTTGGTCCTCATACTCTTGTCTGAGTTCGCCTGGTTCACTTACCTTGGGTTTTGGAATCAACATGTCaacttcctcctcctgctcctcctcaaCCCCATTTAATCTGCGCTGGCACTGTACAGGGAAGGCCTTTTGGATACGTTTCCAAAGCTCCACATTAACCAGAGTCTTTTTTCTAGTATTAAGCCTGGCCCAAGTGGACACTCGCTTCCGGCACAGCGGACAGCACATGTTGGCCTTATCCACCGTTTCCAGAAAGCAAGGTTTGCAAAAGGTATGCTCGCATGGCAGAGTGACAGGCTCCAGGAAGATCTCTAGACAGATGGGGCATAAGCAGTCTGCCCGAGTGAGCTGTCCAGAGCCCCCCTGCACCAGCTTGGGCTTCGGCTCCACCTCTGACACTGGTGGCATCCTGCCGCCGTTCTACCTCTCTCACTCCAGGGGATCTAGAGTAGACTCCTCTGAGGGTCTCCAGGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18323 lncRNA downstream 155390 25514715 ~ 25569523 (-) False LOC111193737
TU18327 lncRNA downstream 200617 25523787 ~ 25524296 (-) False LOC111193738
TU18321 lncRNA downstream 204712 25514715 ~ 25520201 (-) False LOC111193737
TU18319 lncRNA downstream 204781 25514715 ~ 25520132 (-) True LOC111193737
XR_002650681.1 lncRNA downstream 204792 25516786 ~ 25520121 (-) False LOC111193737
TU18382 lncRNA upstream 29785 25755941 ~ 25758034 (-) True G13685
TU18477 lncRNA upstream 245249 25971405 ~ 25975983 (-) True G13769
TU18473 lncRNA upstream 276175 26002331 ~ 26006680 (-) False nars2
TU18522 lncRNA upstream 585279 26311435 ~ 26311750 (-) True G13801
TU18745 lncRNA upstream 943963 26670119 ~ 26698793 (-) True G13960
XM_015602309.2 mRNA downstream 43957 25673937 ~ 25680956 (-) True nudt8
XM_022675523.1 mRNA downstream 43961 25673872 ~ 25680952 (-) False nudt8
XM_007236756.3 mRNA downstream 64450 25643346 ~ 25660463 (-) True LOC103046310
XM_022675494.1 mRNA downstream 200310 25523832 ~ 25524603 (-) True LOC111193738
XM_022675398.1 mRNA downstream 499098 25219209 ~ 25225815 (-) True LOC111193727
XM_007236774.3 mRNA upstream 102767 25828923 ~ 25905572 (-) True maml2
XM_007236775.3 mRNA upstream 186443 25912599 ~ 25998864 (-) True gab2
XM_007236776.2 mRNA upstream 276210 26002366 ~ 26015063 (-) True nars2
XM_022675663.1 mRNA upstream 322705 26048861 ~ 26299928 (-) False tenm4
XM_022675644.1 mRNA upstream 322705 26048861 ~ 26299928 (-) False tenm4
TU18307 other downstream 230461 25473734 ~ 25494452 (-) True G13630
TU17900 other downstream 1816142 23904183 ~ 23908771 (-) True G13322
TU17895 other downstream 1921095 23784471 ~ 23803818 (-) False LOC103035686
XR_002650646.1 other downstream 2170943 23539257 ~ 23553970 (-) False LOC111193708
XR_002650645.1 other downstream 2170943 23541334 ~ 23553970 (-) True LOC111193708
TU18474 other upstream 281086 26007242 ~ 26016396 (-) False nars2
TU18746 other upstream 952125 26678281 ~ 26698793 (-) False G13960
TU18787 other upstream 1103865 26830021 ~ 26833598 (-) False fam109a
TU18929 other upstream 1172849 26899005 ~ 26902713 (-) True G14113
TU18930 other upstream 1172849 26899005 ~ 26902713 (-) False G14113

Expression Profile