RNA id: TU18473



Basic Information


Item Value
RNA id TU18473
length 724
lncRNA type sense_over
GC content 0.26
exon number 4
gene id nars2
representative False

Chromosome Information


Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 26002331 ~ 26016396 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


AGTGGGGCTGTGATCTTCAGACCGAGCATGAGAAGTTCCTAGTTAAGCACTGTGGGGATGTTCCAGTCTTTGTAACTGATTACCCCTATGACCTGAAGCCTTTTTACGCCAGAGACAACCAGGATCAGCCTCAGCACACGGCAGCAGCTGTAGACCTCTTGGTGCCCATTGTGGGGGAGCTGTGTGGCGGTTCTCTTAGAGAGGAAAGACCAGAGCTATTGAAGACACGGCTAGCTGGGGCTGGACTGGAGGAGACCTATGCATGGTATTTGCAGCTGAGAGAGTTCGGTTCAGTCCCTCATGGTGGCTTTGGGATGGGCTTCGAGAGATACCTGCAGTGTGTTTTAGGAGTCGACAACATCAAAGACACTATTCCCTTTGCACGCTCTTCACGCTCCTGCCTTCTATGAAGGAGTCTAGAAGGAACTTCGTAATAAAATGATGGAATGGATTTGTTATTGTTGCATATGTCCTAATAGAGTGACTAATGTGGCCAAATGGTGAGGCAGAGTCGCGTTTTTTGAATAATGAGTTCCTAATGCACAGGAGCAGATGGTGAGAGATAGTAAATTATTTCAGATTTCATTAAGaattttgtgttggtttattttaatgagGAATTTCAAGCTCCCTGACACATCTTTTAATATGCAATAAACACCCTCTCTTGTAAAATGGGGTGGAAAATATGTCTGTGGAATCGGTGGGACTGAAACAATCAAGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU18477 lncRNA downstream 26348 25971405 ~ 25975983 (-) True G13769
TU18382 lncRNA downstream 244297 25755941 ~ 25758034 (-) True G13685
TU18327 lncRNA downstream 478035 25523787 ~ 25524296 (-) False LOC111193738
XR_002650681.1 lncRNA downstream 482210 25516786 ~ 25520121 (-) False LOC111193737
XR_002650680.1 lncRNA downstream 484125 25515732 ~ 25518206 (-) False LOC111193737
TU18522 lncRNA upstream 304755 26311435 ~ 26311750 (-) True G13801
TU18745 lncRNA upstream 663439 26670119 ~ 26698793 (-) True G13960
TU18751 lncRNA upstream 670091 26676771 ~ 26677906 (-) True G13963
TU18925 lncRNA upstream 931196 26937876 ~ 26962565 (-) True G14112
TU18923 lncRNA upstream 955046 26961726 ~ 26962565 (-) False G14112
XM_007236775.3 mRNA downstream 3467 25912599 ~ 25998864 (-) True gab2
XM_007236774.3 mRNA downstream 96759 25828923 ~ 25905572 (-) True maml2
XM_015602309.2 mRNA downstream 321375 25673937 ~ 25680956 (-) True nudt8
XM_022675523.1 mRNA downstream 321379 25673872 ~ 25680952 (-) False nudt8
XM_007236756.3 mRNA downstream 341868 25643346 ~ 25660463 (-) True LOC103046310
XM_022675663.1 mRNA upstream 42181 26048861 ~ 26299928 (-) False tenm4
XM_022675644.1 mRNA upstream 42181 26048861 ~ 26299928 (-) False tenm4
XM_022675641.1 mRNA upstream 42181 26048861 ~ 26299928 (-) True tenm4
XM_022675679.1 mRNA upstream 42181 26048861 ~ 26299927 (-) False tenm4
XM_022675682.1 mRNA upstream 42181 26048861 ~ 26299927 (-) False tenm4
TU18373 other downstream 276175 25724913 ~ 25726156 (-) True G13677
TU18307 other downstream 507879 25473734 ~ 25494452 (-) True G13630
TU17900 other downstream 2093560 23904183 ~ 23908771 (-) True G13322
TU17895 other downstream 2198513 23784471 ~ 23803818 (-) False LOC103035686
XR_002650645.1 other downstream 2448361 23541334 ~ 23553970 (-) True LOC111193708
TU18474 other upstream 562 26007242 ~ 26016396 (-) False nars2
TU18746 other upstream 671601 26678281 ~ 26698793 (-) False G13960
TU18787 other upstream 823341 26830021 ~ 26833598 (-) False fam109a
TU18929 other upstream 892325 26899005 ~ 26902713 (-) True G14113
TU18930 other upstream 892325 26899005 ~ 26902713 (-) False G14113

Expression Profile