RNA id: TU18745


Basic Information

Item Value
RNA id TU18745
length 5850
lncRNA type inter_gene
GC content 0.39
exon number 5
gene id G13960
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 26670119 ~ 26698793 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGTGAGCTGGCATTCATACGTGTGAAGAGAGAGTGAAGAGTGGAGAAGTTGACAGAGAAATGCAGTATTAAATGCAGTATTAGTGAGAAGCGTAACAGAATTTCTCCCACTCTGTTTGGTGGATTCAGACACAGGTTTAGAGATGTTGGTTTCGATGTTAACAGCACTCTACATGATGATGAGACTAGCTGAACAGTTGGGGGTCAGGTTGGTTCGACAGCCGGATGCTCTGCCCTACATGGTGTCTCAGCCGCTACCCTGGCAGGTTCATTATGTGTCCCACAGTCGTAGAGGAAGCAAAGCAGACGAGtatGAAGGCCAGAGGAGGAACAGTATGGGTGTATACAGGAAAAATTCTACTTCTAGTAACGGACAGCCTGTCCTAGTTAACCCCGCATTTGCAGACAAGGCAGCCGCCACCATTCAGCACCAGTACAGGAAGTACCAGCAGAAGAAGCACAAGGACGCCAAATGAAGCCCATCAGCTCGAGCAATAACCAGCGTCTCCTTCAGCTATTCACATcaaacataacattatgaccatctcCATGTTTTCACATTCACTGTCCATCTTATAAGCTGATCACATAGGATAATGTGCAGTTGTATGACTTTTactgtgtctgtttctctgtatactttattattgtgctcttttcaccctgttctttaatactcacaaccccacaggagagaaaaccaccacagaacagctgttattattatttgggtggtgggtcattattctcagcactgcagtgattagcactgattagcatggtggtggtgtatgaggtgttagtgtcagatacagcagtgctgctgcagtttttaaacactgtgtttaatcactcactgtgCTCCACTCTGCAGCTGTATATGTTGATTATGTTCACAAcatcaatataataaaaaaaaaatgtaacacaaTAACAGAAGGCAAAACCCCCAGGTCATAGAAAGATAGCTTTATTGCACAAGGTGTCGGAGtactctttttctgttttcgtTTTgtttcatagaaaaaaaaaaactgtatagtTAAACACAAGCAATTGCAAATTGAAGCAACTTTTTCCataaaagtttatgaatcccctctgtattttttttataactttccccttgtaattatttgtatttccTTTTTCCTTATCTTTTAATAACCAGCAAAATATTCAGAGCATGCAATGCCATTTTCTTTagaataactaaaaaataaaatcaaaacaaaaaacaataaacaaagtaaataaaacaaccaacaacataaatgaacatgaccgcaacaaaacaaaaataaaacaaacaaacaaaataaaacagttgaaataaaataaaattaaatacaagacATTTTTCTTCTGGGATCTTGTACCCCACTCAAAATCTATTTTTgttagattttatatattttattattttgaatcCCCTCACATTTAAAGTTATACCTTTAATCGGACGCTTTGTGCCCTGGTTTCTTCTGGAGATGTCGAAAATAgtaattatttatacaaaacacTTTGTTATATACAAGAGTCATTATTtgcagattacaaattatgttGATGGGAGAGGCCTGGATAAAACAggtaatctgattggttgaggaaATGGGGCAAACTGGATAAATATGGGTGGGCGAACAGGGCGGGTAGGGACGGAGTTTGATTCCTGACTCCGCCCAATATCTACACAGCTTCTCCTATGATTGGCTGGAGCTGAGGAGTCCCTGATTTTGACTGATTGAACAGGCCTGCCCCACTGCGTAACAACTGCATTTCTCAACATAAAAACAATCATTTCAAATAAAGCAAGACAAACTCAACAGGATTTACAGCTACAACTAGAAATATCCAAAAGAAATggaacattttatataattaaactgGATTAAACACAACACATGGGGCTGTTCAGTGGCTGAGGGAGTGTTTGTAAATGGGTATGACATATCTAAATGAGTGTGAATATCGCACGACTCAGACGGTCCTGATGAAAGCAGCTGATGGGCTTTACTTCAGACTTCTGTGCTTTTATCTGTGAGAGgaacagcttcagcagaatGATTCATTTGATGATTTAAGAGGTTTAAGGGGTTTAAATTCAGTGTAGACTCTTCATTCTGGGGTTCAATCTGAATCTGTCCACACAATATTGAACTCATGTTTCCTGTTTGATGCTTGTGAAGTATGTTTGGTcgtctttaaatatattaatatgcagTGTGTTTGGGATTACTTCAGTTCACTAATGTTTAAAATCGTTTCAAAATATGAACGcacagtaaaatgtaaatatatgtcgttctgttctctgtttaaactgttttttaccAAAAGGATGCTGTGCTATGAGGGCATGTAGTGCACTTAGGGGGCGCAATCTCTCCCTTATAACAGTTGATATCTAACTCCTGTATACAACAGGCAAATGGAACAATCAGACAGCAGTAATGATCTGTACTGTGAATGAATCTAGTGGAAACTCAAGATTTTCggatgtaaataataaaatcctcATGTTCAAGATTTGAAAAAGAATGGAATGATGACATTTCTTGCTACTGAACTACCTCAGCACTGATCTTAATGGCAGCACTGACACTAAACTACACGCCGCCGGGTTTAACACACTTTAACAGGGATACCGCGCTATACAATTTCGCCGATTTAGCAGAATCACGTTTGTTCTGAATCCTGAATATCAGACCGGCTGAGCAGCACTAGAGCTTCTGAACACCAACCCCAGTATTATGAACCTCCAGTGTCTTATAGCACATATCCGTCTATTTCACACCGTTTTCTGCTTGGGTTTAACGTTTGTTACCCGTTTTTCTCTCCATTACATCCCGTGATGTACCCTTCCTCTCATTCTGCTGCTCCTCCCACCGAGCGATTGTCTTCAGatctcttttttaaaatataatttttctttACTCAATTCGATATGGCATTATATCTCTGTTCTCACcacttaaatattcactatatctttagatagaaatatatatatatatatatatttatatatattttggcaaGAAACACggtaatatattttcttttttctcttttgtattGCAGGAGCCCTGATGTAGTGTTTGGAGTGTTTTGTTGGTTGAAGTCAGTAGTTGAGTAGTTGGTtggtttttagatgttttagagTGGGGCTTTGCTTTGGGAGTCGAGTCAGTGTAGGGAAAGGATACTGGATGAAAAAAAGATAAGATATACATTAAATACGTTCTTTACGTGTACGGGCTCGGGAGGCATTTTAAGATTCGGAGGATGTGAGAGAGAGCGCTGTGTCTTCCCTTCTTCTTCTACTGCCCTCGTTTCTTTCTCATCTTCCTGCACTGCCCTACATCACCCCACCGTACTTCCTAAAGCTAGTGTCTACAGCATTGAACGTGAACTTGACTTGAACGTGTGTCGGCATTTAGAGGACCTAAAGCTAATGTCTACAGCTTATGTTGCAGAATAACGAGGCCCGACAGCGCCCCCTTTCTggtggaaaagaaaagaaggtttaaaaaaaattataaacacaAATGCAGAAAAGCTACTCAGCAACAGCATATATCTCTCCGTCGATCCGTCCATTccctgttcctctctctctctctctctctctctgcctctgttCTTCCCTGTGTCTCGGTTTGGTGAGCGCATCCTCTCTCCGATTCATCTCCAGCTCGCTGACAGGCCCAAGCCGTGTCCATCCAGGAGAGGCTTCAAGGTGTTCACAGTGAGGATGAGGAAGGTTGAGTTAAAGGGAAATGTGGGTTCATGGGATCTATCACAGACAGGTAAACTAACAAACATCGAGAACGAGAGCGTGTGAAGGAAGAGAAGCGGGAGCAGGAGACGGAAGGTCTGTTCACCtctttaacaaacacaaaactttCCATTCTTTCTTAGACCAcctcctccttttctctctgtaGCCTGGAAAACAGTGTGACTCCATTATACCAGAGAAGATACAGAATACACAGGGCAGAACACACAACACACGGCCCCTTCACACGCCACaccctccatctccatctccatacattaataaacaaacaaacatcagGCCCATATATATGACACGTTCTGGTGGTGTGTGCTGACCATGTGTGTAGGCATATTTACACTGATTAGCTATAACATTATGACCCACTTCTATGTTTCTACATTGTCaatcttatcagctccactgatcatatcaGACACTTTGCAGTTGTATAATTATTAAAGACtatagtcctgtatctgtttctctgcacatTGTATTATCCTGATACGCTGATAAGAATGAATTTAGAAACAAGGTGGCGGTGtaaatgttatggctgattttcAGTGTAGTtccatatataaacacacaggcgtgtgcacatgcacacacacacacacacacacacacacaaacaaacgcAGGCTTGAGAAATATCTGTGAATCTACTCCCTCCTTAGTGCACAAGTTCAGAAATTCTGggggaaaaatacaaataaaacaatggatagaaaaaaacaacagtttccATCCATCCTCTGTGAAATAGCTccagtcatgttttttttttcctttttttgtttgtttataaaatagTCAATAACACTTTATATTGTGTCATTAATtgcatgaaaaacaaaaaaagactgACTTTTCTGTTGGCTTATACCACAGTCACTGAATAGTTTATATCTGAATCCAGACCAGTCTGGCCAGGGATGGGCAAGTATGATGACACCAGGATTGATTCTTTTATGCATAAGCACTTTCCGAGGCAATGTGTCGCAGTGTGTTATCGCTCTTTCAAGAGTTGTGGAAAGAAACACTTCAAACAGCCTAAACACATCTAGACTGGTTAAACAATATATCTCTTAAAATCATATCTCTTAAAAAGCTTTCCTACTGTCAAAAAGTCAAATTAGCAGGTGCACATGGAAAGTATTTCGTGCATAAGGTCCAAGGTGTCTTTGACAGACAAAGAAAAGATGAGTAGGTGAGACAGGcaatgtgagaaaaaaaatgagaagaacAGAAGAGAGAAGCTGGGTTGGGTAAATAAGAGTGTGGGAAAGGCAAAGATAgccagagtgagagagagagcgagagagaaagtgagtaaaagagagagagagagagagagagagagagaaagagagtgagaaaggcagacagacaaacaggtaAAGAAAGACCCCTGTGGTGGACGAGCCCAGCGAGTGCAGAGTTCAGTTCCCACCCTGTGCCAGGTGAGCTCTGgatatatgtgttataaatgtgtgtgtgtgtgtgtgtgtgggagagagaggagggactACACCAGTGTGTAGGATTTTGAATACGCCCCGGCGCTCTGCTTTTGCAGTCTTCCCAAACCAGATGAGCTGCTCTCCAGCAGAGAGTCCCTGGAGCCCCCAACCTTGGAACTGCCAGCCACGCCACCTCCCCCTGTGGAGCCCGTGCTGGCGACGGCACCGGCCGCGGCAGCTGCTGCGCCGGTGCTCTGACCGGCCGAAGAGGTGGATGAGGAGCTGGGCATGGTGAGAGTCCTCTGGGGCAATGTGGCAGTGCCCGAGCTGATGCTGGATCCACCTGTGGTGGTGCTCGAGGCTGGGCCTGAAGCCCCTGAAGCTCCTGAGCTGGTCAGGCTACTCAGGCCGCCGTGGCCCAGCGTCAAGGATGGCTGTTTGGATGGGTCTAATGTCATGTGACGGCCCTGTGTGTGGTAGGCTCGTGCTGCCAATCCTCGAATGGAGGCTTCGCGCGGCGGCACCACAGGGCAAGGGTCGTGCAGCTCAGCCTGCTTGCGGAAGAAAGGGTCCGTCTTCATGTACAGGGGTAGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18522 lncRNA downstream 358369 26311435 ~ 26311750 (-) True G13801
TU18473 lncRNA downstream 663439 26002331 ~ 26006680 (-) False nars2
TU18477 lncRNA downstream 694136 25971405 ~ 25975983 (-) True G13769
TU18382 lncRNA downstream 912085 25755941 ~ 25758034 (-) True G13685
TU18327 lncRNA downstream 1145823 25523787 ~ 25524296 (-) False LOC111193738
TU18925 lncRNA upstream 239083 26937876 ~ 26962565 (-) True G14112
TU18923 lncRNA upstream 262933 26961726 ~ 26962565 (-) False G14112
TU18945 lncRNA upstream 264849 26963642 ~ 26964693 (-) True G14125
TU18961 lncRNA upstream 346715 27045508 ~ 27046047 (-) True G14130
TU18962 lncRNA upstream 348076 27046869 ~ 27047115 (-) True G14131
XM_022675652.1 mRNA downstream 370191 26050978 ~ 26299928 (-) False tenm4
XM_022675646.1 mRNA downstream 370191 26050978 ~ 26299928 (-) False tenm4
XM_022675682.1 mRNA downstream 370192 26048861 ~ 26299927 (-) False tenm4
XM_007237658.3 mRNA upstream 14215 26713008 ~ 26724170 (-) True LOC111188176
XM_022675705.1 mRNA upstream 35815 26734608 ~ 26768101 (-) True gak
XM_022675710.1 mRNA upstream 74237 26773030 ~ 26817911 (-) False sh2b3
XM_022675713.1 mRNA upstream 74237 26773030 ~ 26805159 (-) True sh2b3
XM_022677967.1 mRNA upstream 126063 26824856 ~ 26833613 (-) True fam109a
TU18474 other downstream 653723 26007242 ~ 26016396 (-) False nars2
TU18373 other downstream 943963 25724913 ~ 25726156 (-) True G13677
TU18307 other downstream 1175667 25473734 ~ 25494452 (-) True G13630
TU17900 other downstream 2761348 23904183 ~ 23908771 (-) True G13322
TU17895 other downstream 2866301 23784471 ~ 23803818 (-) False LOC103035686
TU18787 other upstream 131228 26830021 ~ 26833598 (-) False fam109a
TU18929 other upstream 200212 26899005 ~ 26902713 (-) True G14113
TU18930 other upstream 200212 26899005 ~ 26902713 (-) False G14113
TU18940 other upstream 324720 27023513 ~ 27029917 (-) False fam214b
TU19514 other upstream 2914819 29613612 ~ 29643303 (-) False emp2

Expression Profile