RNA id: TU18925


Basic Information

Item Value
RNA id TU18925
length 1870
lncRNA type read_through
GC content 0.44
exon number 2
gene id G14112
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 26937876 ~ 26962565 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTGCAGCCTGTATGAAAGACATACTGTCAGCGCTAACAGTGTGAACGAACACACAGCTGtgaaaagacacacacacacacacacctgcacacaaaATAGCGGATGACGTTAGCGTGACAGACGATGATCTCGTAGCTGTCCTCCTTCTGTTTGGGGTCGGCTCGGTGGATGTAGCGCCGGAAAGCCGCCTCGATGCGCGCGCCGTCCTCATGGTACTGCTAAAAGCGGCACAGAGGATCACACACAGTGGCACATataacacccacacacacacacacacaaacacacacacacacacacattcatgtaCTGAATCACTGTCTGAATGATCCTGCTGAGAATCACTGTGAGCCAAACCTGCACTAAACTCTTGAGTCAACCACCAAAAACACTGAGACTACTCACACAGGAGTCTGtttaaaactataatttaatgaacactgtttacactgttaaatatagatacagctctggaacaaaataagagagcacttaaagaATGGTGAATTGAAatgataaagttatccaaaagcagtgtgtaagactggtggaggagaacatgatgccaagatgcaaaaaaaaactgtgatttaaaaccagggttatttttttttttaccagatattgatttctgaactcttaaaactttatgaatatgaacttgtttttttttttttgcattatttgagatctgaaagctctgcagcttttttcagtcatttcagccatttctcattttctgcaaataaatgacaatatttttattttgaatgtgGGAGaaacataaacttataaatagcaaaatcagagaaactgattcagaaactgaagtggtcttttaattttttccagagctgtatatgtatgtataaaaaagCATCATttataactttacattacaaataGAAACATCTGGTAGATAGATCTGAATTTTTGAAATGCTCTAGACTAGTATATATAAAAGCTCAGGCCACACAAATGGTATTTTCTATAGAAAGATTCAGAACTCTGTAAGCATGAACGACTGAGTAACATCAGGCTAATTTCTCTGATGTATGATTTCTACAGCAGACTGAATGTTCAGCTGATTTTATGTGAAACCTGTGAAGCATCTGCTTGTAAATATTTAGAAAACACACCAAAGAACAGTACACACTATGTATGCAAATTTGCAGAGTTCCAGCGCTGGATAAGCGGGATTTCCAGCTCGTTTTTGGGGAAATGTAGACACGGAATGATTCAGCGCAGGCTGggttttgtttatctgtttgtttgcGTAAACTGCGGTAGCGTTAGCATAGCTCAAtctttgcatctttttaaaTCTTTGCATACTGACAACTGATGCACACGTTCGGCACCACAAGCACGGAAAGAACCCAAACACAGGCCTACGTGCAGAGACACAGTCCACCCCCACACTGCCGCACACTGTAGCGCTGCAGCTAAGTGCTAACGGGGAAGTGGAAACTGTGGAGGAAACCCCTTTTTACTTGCCTGTATCTGTTacacaggtgtaaaaacactgaCTTGTTAGATCCGCTCTACTTATACAAAAACGCCATTAGCATAGCTAAAAATAATAGTTAGCATGTAGCCAATTAGCATTTTGTCTCTACTGTCGTCGGTTTTCCAGGTTAACAGTAGGTTAAACAGGGTTAGCAGTGAGGGGTCAGGATGCTAATTGAAgggttttagctttagctttcaaTGTTTTGTAACTCTGAGGTAAAACTAAACGTTTACTAGATTTTTTGCAGTGATTAGCCAAATTCTGTTGACTTTTTAATTCTTGTTGGCTCTGATTTGTGTTGCTAATGCACTAAGTTGTCATCCAGGACCaaatttattaaagtttttaattttttaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18745 lncRNA downstream 239083 26670119 ~ 26698793 (-) True G13960
TU18751 lncRNA downstream 259970 26676771 ~ 26677906 (-) True G13963
TU18522 lncRNA downstream 626126 26311435 ~ 26311750 (-) True G13801
TU18473 lncRNA downstream 931196 26002331 ~ 26006680 (-) False nars2
TU18477 lncRNA downstream 961893 25971405 ~ 25975983 (-) True G13769
TU18945 lncRNA upstream 1077 26963642 ~ 26964693 (-) True G14125
TU18961 lncRNA upstream 82943 27045508 ~ 27046047 (-) True G14130
TU18962 lncRNA upstream 84304 27046869 ~ 27047115 (-) True G14131
TU18959 lncRNA upstream 148623 27111188 ~ 27125507 (-) True G14128
TU18984 lncRNA upstream 464237 27426802 ~ 27430492 (-) True G14152
XM_022677728.1 mRNA downstream 1066 26933254 ~ 26936810 (-) True LOC111194248
XM_022677718.1 mRNA downstream 16625 26915440 ~ 26921251 (-) True LOC103036549
XM_007241691.3 mRNA downstream 51465 26884856 ~ 26886411 (-) True LOC103036237
XM_022675716.1 mRNA downstream 78819 26835494 ~ 26859057 (-) True LOC103042772
XM_022677967.1 mRNA downstream 104263 26824856 ~ 26833613 (-) True fam109a
XM_022675746.1 mRNA upstream 9687 26972252 ~ 26982609 (-) True ankle2
XM_022675748.1 mRNA upstream 21319 26983884 ~ 27007880 (-) True golga3
XM_022675754.1 mRNA upstream 46982 27009547 ~ 27019342 (-) True ranbp1
XM_022675759.1 mRNA upstream 60930 27023495 ~ 27038746 (-) True fam214b
XM_022675771.1 mRNA upstream 166033 27128598 ~ 27319845 (-) False LOC103032722
TU18929 other downstream 35163 26899005 ~ 26902713 (-) True G14113
TU18930 other downstream 35163 26899005 ~ 26902713 (-) False G14113
TU18787 other downstream 104278 26830021 ~ 26833598 (-) False fam109a
TU18746 other downstream 239083 26678281 ~ 26698793 (-) False G13960
TU18474 other downstream 921480 26007242 ~ 26016396 (-) False nars2
TU18940 other upstream 60948 27023513 ~ 27029917 (-) False fam214b
TU19514 other upstream 2651047 29613612 ~ 29643303 (-) False emp2
TU19553 other upstream 2795122 29757687 ~ 29761226 (-) False dexi
TU19597 other upstream 2926670 29889235 ~ 29890576 (-) False LOC111193878
TU19677 other upstream 3298453 30261018 ~ 30268350 (-) True rps15a

Expression Profile