RNA id: TU19296


Basic Information

Item Value
RNA id TU19296
length 2650
lncRNA type sense_over
GC content 0.33
exon number 3
gene id carhsp1
representative False

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 28749534 ~ 28796458 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gtaaaaaaaaaaaaaaaaaaaaaatactgtggcTCTTGGTTATATGTGTGGGTGAATGAGagtgttttattaaagttttctgCCATcatcttcagtgtttttttttctgttgtcagtGCTGCACATCTACCAGACATCCCACTTCTTCCGTGACTTGCAGGATTCTCCTGTATATTTTGGTAGTGGCTCCTGTTGCAATACCACACAAATTGGGATATTGAACATATGTTGGGCTTGCTTGTACACTTTTGGGAGTGAAAAATTCagtgtttaattcagtgtttagtcatgaaaaatatcagatttgggcCTAAATTACCTGCTTTGAGGTTGAGGTAAGTCACATGATTAATtcatacatacaacatataattcagGCAaagagaatgtaaaaaaaaaaaaaggcaaactgAAATCGGGACGGGAATGATGCAGGCAGGGttctatttttcttattttccagtttgttgtgctgttttctgtgtgtatatatatatataaaacaggtcTGAAGTGAAAGAAGAGAGCAGAGTGAAGGACGGGAATGCTACAGAGCAAGCAGGTCAGCTTTAGACCTTCAGGAGAATCACCCCAAGCATCGTATTCGTACATTACTGTACGTACATCCACAGAAACATGAACATATGAACACGGCATGCTGCCTATTTCCGTTCGTGGCACTGAATGGGGACGGCAGACGAGGGGACGGACTCTGCAGGGGGTCATGTTCACCTGAGAAGTGACCAGCGCAGCATTAAGAGAAATGAGCTTAGATCTGAGTGGCCTGCAGCAACTCTAGCAACTTCCCATTGGCTTCCCATTCTGTTGTGAGTGAGTCTAGACGACATGTATTCTGGACTTTTCTGTGTTTTGGGAAATGTGCACCAGAACTACGAAGACTCGGAAAGTAGAGACATTTTTACAGGTTAAAAATGAGATATCCTTTAATTGAGAATcagaaaatgtaagaatgtaTTGAGTCCAGCAGCCATTTGTGCTTTTGGAGAAGATGATCTGGGCTGAGGATGTGGACGCAGGTTTAGCCTGGAATTAGGATTATTATCCACTGTACAATTGGACACAGGTCTTATTAAATCAagagaaattaagagaaatTACGACGATTTACCACCAACCTCAAATACAGCCAATCGATAACATAGATAACTGATATCTACAAAGAGCTTCTTTAGTTTCAAATGGAGCTGAGATGCTAGGACAACAATGCTAACAAACGTTGGACTTGGACTGTCCAACCATGTGTAAAACCATGTGTTTCTACCTTGTTTTACAGTAAATTCCAGTAGAAAACATGTCTGTATGACTCCTGTATTAGTAGCTCAACTGGGACTCAAAGGTTTAGTCAGTGATGAAACTAGTAGGTTGTAAAAATGGGACCAATCtttgttagcaatgttagcctAGCATTTCCTACACTTCTACATTACAAAAGCCCACaccaaatatcaaatatcagtGTTTCTAAACcacattttaagtgatttagCTAAATTCATGTGCAAATATTTGGACACCCCTtgcaataaacacaaataagttTGTAATTTACGTTATAAACACTGGTGACGCAGACACACAGTGCAAATGCgtgcatatatacatacatgcatgcCTGTCtaatgtagagaagtattaacaaaagaataggactcgcttgtttgaatcccggtcatgtagcttgccatcagctgccggagccctgaaagagcacaattggccttgcactCTCTcgctgggtgggtacagtagatggcactctttcccctcatcattcctagggtgatgatgatcagcacaaggctgcgtctgtgagctgatgtatcagaaccgagtcgctgtgctttcctctgagtgcgctgtgctgtgatgctactcgacaatgctgcatcagcagcagtttaaaaagaggcagagtctgacttgtATACGTTACTGTGGATTAGagggctgtaaaaaaaaaaccagcagTAAAACATCTTCTTCTCTGTTATGATACCGATCCCAACTAGTGTCTTCACCTCatttgtggctgaatgcaattaaatcctcacaacaatgctGTCCgtgaatctagtagaaagccttctctgGGCAgtaatactcttgatttcataagaaatatactttattttgtctatatagtgtactgtactgtatatgagaCTGTATTGGTATTTGTAATGGTTCCTCGGGAAATGAAATACTGCTTTTATACGGTACACAGCGTGATTAAACTCAGATCAGTGGTCCGCTCCTCGCTGTAAAAACAGTTGGCGTTCTGCGTGCGATTAAGGGCATGCTTTATTTTCCTAATAAAGGACGGTGAGGAAGGCTGGCAGGCAGCCAGCTTTAATACAGCTGCCAGGAATTGATTTGCTCTGACTGACACAGGTCAAAGAACAATACACACAGTAACTGATCCCAGACTGGCTTTCCAAATCCTGCAGCCGAAAAACAAGAGGGAGCTTCTCACTCAGACAGATAACTTAAAGAGCCCatatcctatatatatatatatatttaccctTGCTTTTTCTTCGTTCCAACTTTCGTATGATTTATCTTATTTTGTTCCCTGAGCTCCACTTAAGACTTAATAGTGGTTttgttctatatatatatatatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19313 lncRNA downstream 34251 28697362 ~ 28715283 (-) True G14394
TU19218 lncRNA downstream 118720 28630590 ~ 28630814 (-) True G14339
TU19212 lncRNA downstream 198830 28550453 ~ 28550704 (-) True G14333
TU19206 lncRNA downstream 212344 28519571 ~ 28537190 (-) True G14330
TU19184 lncRNA downstream 558065 28191074 ~ 28191469 (-) True G14312
XR_002650746.1 lncRNA upstream 21983 28813041 ~ 28815878 (-) True LOC111193842
TU19337 lncRNA upstream 108295 28899353 ~ 28900100 (-) True G14415
TU19338 lncRNA upstream 108295 28899353 ~ 28900100 (-) False G14415
TU19334 lncRNA upstream 112703 28903761 ~ 28924250 (-) True G14412
TU19340 lncRNA upstream 159687 28950745 ~ 28951228 (-) True G14417
XM_007245546.3 mRNA downstream 87232 28633776 ~ 28662302 (-) True tmem114
XM_022675825.1 mRNA downstream 724733 27852176 ~ 28024801 (-) True LOC103034330
XM_022675832.1 mRNA downstream 808700 27852176 ~ 27940834 (-) False LOC103034330
XM_022675828.1 mRNA downstream 814240 27852176 ~ 27935294 (-) False LOC103034330
XM_022675793.1 mRNA downstream 1120288 27604572 ~ 27629246 (-) True LOC103033698
XM_007245549.3 mRNA upstream 11032 28802090 ~ 28812124 (-) True naa60
XM_022675901.1 mRNA upstream 30910 28821968 ~ 28829514 (-) True eci1
XM_007245554.2 mRNA upstream 114003 28905061 ~ 28933768 (-) True clcn7
XM_022677733.1 mRNA upstream 143568 28934626 ~ 28943090 (-) True ptx4
XM_007245558.3 mRNA upstream 175427 28966485 ~ 28995105 (-) False usp7
TU18940 other downstream 1719617 27023513 ~ 27029917 (-) False fam214b
TU18929 other downstream 1846821 26899005 ~ 26902713 (-) True G14113
TU18930 other downstream 1846821 26899005 ~ 26902713 (-) False G14113
TU18787 other downstream 1915936 26830021 ~ 26833598 (-) False fam109a
TU18746 other downstream 2050741 26678281 ~ 26698793 (-) False G13960
TU19514 other upstream 822554 29613612 ~ 29643303 (-) False emp2
TU19553 other upstream 966629 29757687 ~ 29761226 (-) False dexi
TU19597 other upstream 1098177 29889235 ~ 29890576 (-) False LOC111193878
TU19677 other upstream 1469960 30261018 ~ 30268350 (-) True rps15a
TU19826 other upstream 2098548 30889606 ~ 30892648 (-) False LOC103045124

Expression Profile