RNA id: TU19385


Basic Information

Item Value
RNA id TU19385
length 225
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G14456
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 29234399 ~ 29234623 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cagttaatcctgttggatgtggttggtccttcttcttggtggtatgctgacattaccctggataccgtggctcttgatgcatcacaaagacttgctgtcttggtcacagacgcgccagcaagacgtgcaccaacaatttgtcctcttttgaactctggtatgtcacccataatgttgtgtgcattgcagtattttgagcagaactgtgctcttaccctgctaatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19384 lncRNA downstream 5904 29228290 ~ 29228495 (-) True G14455
TU19382 lncRNA downstream 35649 29198549 ~ 29198750 (-) True G14453
TU19381 lncRNA downstream 56503 29177561 ~ 29177896 (-) True G14452
TU19379 lncRNA downstream 78481 29155281 ~ 29155918 (-) True G14450
TU19374 lncRNA downstream 105027 29129005 ~ 29129372 (-) True G14445
TU19387 lncRNA upstream 22803 29257426 ~ 29257668 (-) True G14458
TU19395 lncRNA upstream 50740 29285363 ~ 29285699 (-) True G14466
TU19493 lncRNA upstream 67624 29302247 ~ 29304708 (-) True G14517
TU19503 lncRNA upstream 160537 29395160 ~ 29398166 (-) True G14523
TU19500 lncRNA upstream 161293 29395916 ~ 29399091 (-) False G14522
XM_007245558.3 mRNA downstream 239294 28966485 ~ 28995105 (-) False usp7
XM_007245557.3 mRNA downstream 239294 28966485 ~ 28995105 (-) False usp7
XM_007245556.3 mRNA downstream 239294 28966485 ~ 28995105 (-) True usp7
XM_007245559.3 mRNA downstream 244735 28966485 ~ 28989664 (-) False usp7
XM_022677733.1 mRNA downstream 291309 28934626 ~ 28943090 (-) True ptx4
XM_022675956.1 mRNA upstream 76787 29311410 ~ 29583262 (-) True grin2a
XM_022676002.1 mRNA upstream 378863 29613486 ~ 29643240 (-) True emp2
XM_007245571.3 mRNA upstream 523064 29757687 ~ 29761252 (-) True dexi
XM_015604861.2 mRNA upstream 643418 29878041 ~ 29880914 (-) True socs1
XM_022676078.1 mRNA upstream 654176 29888799 ~ 29892305 (-) True LOC111193878
TU18940 other downstream 2204482 27023513 ~ 27029917 (-) False fam214b
TU18929 other downstream 2331686 26899005 ~ 26902713 (-) True G14113
TU18930 other downstream 2331686 26899005 ~ 26902713 (-) False G14113
TU18787 other downstream 2400801 26830021 ~ 26833598 (-) False fam109a
TU18746 other downstream 2535606 26678281 ~ 26698793 (-) False G13960
TU19514 other upstream 378989 29613612 ~ 29643303 (-) False emp2
TU19553 other upstream 523064 29757687 ~ 29761226 (-) False dexi
TU19597 other upstream 654612 29889235 ~ 29890576 (-) False LOC111193878
TU19677 other upstream 1026395 30261018 ~ 30268350 (-) True rps15a
TU19826 other upstream 1654983 30889606 ~ 30892648 (-) False LOC103045124

Expression Profile