RNA id: TU19395


Basic Information

Item Value
RNA id TU19395
length 337
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G14466
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 29285363 ~ 29285699 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttccttgatttttgatctttttaaagaagtaaaattacagcttgaaactcactgcagcgctgcattgaggtgtaataggaggaatagcggtgctctcgtgtctgtgccggagctcctctgagctcaaaccagactctgtaagttttccgaggcggccgcgaccaacgctcgcgagaactgcgacctgctttccgacctttagttctaacagttctacaaggactactggttcattctttacaaactaacatacagacactctggcagaagctggaaagagaccgaatatgtctgtgaaagccagaaaatgagaaagagaaactaatctgcctgaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19387 lncRNA downstream 27695 29257426 ~ 29257668 (-) True G14458
TU19385 lncRNA downstream 50740 29234399 ~ 29234623 (-) True G14456
TU19384 lncRNA downstream 56868 29228290 ~ 29228495 (-) True G14455
TU19382 lncRNA downstream 86613 29198549 ~ 29198750 (-) True G14453
TU19381 lncRNA downstream 107467 29177561 ~ 29177896 (-) True G14452
TU19493 lncRNA upstream 16548 29302247 ~ 29304708 (-) True G14517
TU19503 lncRNA upstream 109461 29395160 ~ 29398166 (-) True G14523
TU19500 lncRNA upstream 110217 29395916 ~ 29399091 (-) False G14522
TU19498 lncRNA upstream 110673 29396372 ~ 29398784 (-) True G14522
TU19509 lncRNA upstream 114316 29400015 ~ 29401359 (-) True G14525
XM_007245558.3 mRNA downstream 290258 28966485 ~ 28995105 (-) False usp7
XM_007245557.3 mRNA downstream 290258 28966485 ~ 28995105 (-) False usp7
XM_007245556.3 mRNA downstream 290258 28966485 ~ 28995105 (-) True usp7
XM_007245559.3 mRNA downstream 295699 28966485 ~ 28989664 (-) False usp7
XM_022677733.1 mRNA downstream 342273 28934626 ~ 28943090 (-) True ptx4
XM_022675956.1 mRNA upstream 25711 29311410 ~ 29583262 (-) True grin2a
XM_022676002.1 mRNA upstream 327787 29613486 ~ 29643240 (-) True emp2
XM_007245571.3 mRNA upstream 471988 29757687 ~ 29761252 (-) True dexi
XM_015604861.2 mRNA upstream 592342 29878041 ~ 29880914 (-) True socs1
XM_022676078.1 mRNA upstream 603100 29888799 ~ 29892305 (-) True LOC111193878
TU18940 other downstream 2255446 27023513 ~ 27029917 (-) False fam214b
TU18929 other downstream 2382650 26899005 ~ 26902713 (-) True G14113
TU18930 other downstream 2382650 26899005 ~ 26902713 (-) False G14113
TU18787 other downstream 2451765 26830021 ~ 26833598 (-) False fam109a
TU18746 other downstream 2586570 26678281 ~ 26698793 (-) False G13960
TU19514 other upstream 327913 29613612 ~ 29643303 (-) False emp2
TU19553 other upstream 471988 29757687 ~ 29761226 (-) False dexi
TU19597 other upstream 603536 29889235 ~ 29890576 (-) False LOC111193878
TU19677 other upstream 975319 30261018 ~ 30268350 (-) True rps15a
TU19826 other upstream 1603907 30889606 ~ 30892648 (-) False LOC103045124

Expression Profile