RNA id: TU19503


Basic Information

Item Value
RNA id TU19503
length 672
lncRNA type intronic
GC content 0.42
exon number 2
gene id G14523
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 29395160 ~ 29398166 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gtgagaaagagataagtagagagcaaaagagagagtgagaaacagagaagtagagagcaaaagagagagtgaaaagtagagagagagtgagaaagagagagtgagagaagtagagagagagtgagaaagagagagtggttgCTAAACAGGTAATAGGTGGTTGCAAAGCCCTggctggggtgtccaaacttttgactgatagctgctccatacagcagctcctccatacactcacagtactggaggagcaggggagagaaggggttccgtgcgcagagctgctcgtgtgtgagatggaactctgggccccccattcatttctatgggaAAACTTCGTACGACAATTGTACGAAAACCGTACGTCGTATCGCTTCGCAACCTCCTATTAATTTAAAGATCTCGATAAGATCTATAAGCTCGCCGAATTTGGTGtttgtatctcaaaaattgtgaccGTCACGGACGTTCAAAATTCtcccccattcattcctatggggaaaaaatgcgtacgtttacgaagtttttacgaaaaccgtacgaTAAATCGctccaaaaagcacaagcaacgTAATTCACTATAGGTCCTACGATCCGTGAAAGTTTCGTGATTCTACGATAAAAGCTCTAGGAGGAGTAGCGTACAGAAAAAAAGGcgtaagaataataataata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19493 lncRNA downstream 90452 29302247 ~ 29304708 (-) True G14517
TU19395 lncRNA downstream 109461 29285363 ~ 29285699 (-) True G14466
TU19387 lncRNA downstream 137492 29257426 ~ 29257668 (-) True G14458
TU19385 lncRNA downstream 160537 29234399 ~ 29234623 (-) True G14456
TU19384 lncRNA downstream 166665 29228290 ~ 29228495 (-) True G14455
TU19509 lncRNA upstream 1849 29400015 ~ 29401359 (-) True G14525
TU19510 lncRNA upstream 6993 29405159 ~ 29422855 (-) True G14526
TU19518 lncRNA upstream 163632 29561798 ~ 29611474 (-) True G14534
TU19525 lncRNA upstream 195638 29593804 ~ 29600294 (-) True G14541
TU19556 lncRNA upstream 370740 29768906 ~ 29773096 (-) True G14567
XM_007245558.3 mRNA downstream 400055 28966485 ~ 28995105 (-) False usp7
XM_007245557.3 mRNA downstream 400055 28966485 ~ 28995105 (-) False usp7
XM_007245556.3 mRNA downstream 400055 28966485 ~ 28995105 (-) True usp7
XM_007245559.3 mRNA downstream 405496 28966485 ~ 28989664 (-) False usp7
XM_022677733.1 mRNA downstream 452070 28934626 ~ 28943090 (-) True ptx4
XM_022676002.1 mRNA upstream 215320 29613486 ~ 29643240 (-) True emp2
XM_007245571.3 mRNA upstream 359521 29757687 ~ 29761252 (-) True dexi
XM_015604861.2 mRNA upstream 479875 29878041 ~ 29880914 (-) True socs1
XM_022676078.1 mRNA upstream 490633 29888799 ~ 29892305 (-) True LOC111193878
XM_022676086.1 mRNA upstream 544257 29942423 ~ 29960792 (-) True tmc5
TU18940 other downstream 2365243 27023513 ~ 27029917 (-) False fam214b
TU18929 other downstream 2492447 26899005 ~ 26902713 (-) True G14113
TU18930 other downstream 2492447 26899005 ~ 26902713 (-) False G14113
TU18787 other downstream 2561562 26830021 ~ 26833598 (-) False fam109a
TU18746 other downstream 2696367 26678281 ~ 26698793 (-) False G13960
TU19514 other upstream 215446 29613612 ~ 29643303 (-) False emp2
TU19553 other upstream 359521 29757687 ~ 29761226 (-) False dexi
TU19597 other upstream 491069 29889235 ~ 29890576 (-) False LOC111193878
TU19677 other upstream 862852 30261018 ~ 30268350 (-) True rps15a
TU19826 other upstream 1491440 30889606 ~ 30892648 (-) False LOC103045124

Expression Profile