RNA id: TU19509


Basic Information

Item Value
RNA id TU19509
length 632
lncRNA type intronic
GC content 0.48
exon number 3
gene id G14525
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 29400015 ~ 29401359 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgaaatctaaaaacgtttggttaaacgctgaaatctaaaaacgtttggttaaacgctgaaatctaaaaacgtttggttaaacgctgaaatctaaaaacgtttggttaaacgctgaaatctaaaaacgtttggttaaacgctgaaatctaaaaacgtttggttaaacgctgaaatctaaaaacgtttgtttaaatgctgaaatcgtaaaacttttggttaatCTTTTGATTGCCAATTTgatgctaggcagttgctatcatttctgaagtggttgctaagctgttgctaggcagttgctaatgttttccaggtggttgctaagctgttgctaactggttgctaggcagttgctaagtggttgctaggcagttgctaacattttccaggtggttgctaagtggttgctaggtagttgctaacatattccaggtggttgctaggcagctgctaagtggttgctaggcagttgctaacgttttccaggtggttgctaagtggttgctaggcagttgctaacgttttccaggtggttgctaggcagttgctaagttgttgctaggcagttgctaacgttttccaggtggttgctaagtggttgctaggcagttgctaacgtattccaggtggttgct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19500 lncRNA downstream 924 29395916 ~ 29399091 (-) False G14522
TU19498 lncRNA downstream 1231 29396372 ~ 29398784 (-) True G14522
TU19503 lncRNA downstream 1849 29395160 ~ 29398166 (-) True G14523
TU19493 lncRNA downstream 95307 29302247 ~ 29304708 (-) True G14517
TU19395 lncRNA downstream 114316 29285363 ~ 29285699 (-) True G14466
TU19510 lncRNA upstream 3800 29405159 ~ 29422855 (-) True G14526
TU19518 lncRNA upstream 160439 29561798 ~ 29611474 (-) True G14534
TU19525 lncRNA upstream 192445 29593804 ~ 29600294 (-) True G14541
TU19556 lncRNA upstream 367547 29768906 ~ 29773096 (-) True G14567
TU19569 lncRNA upstream 433958 29835317 ~ 29862563 (-) True G14578
XM_007245558.3 mRNA downstream 404910 28966485 ~ 28995105 (-) False usp7
XM_007245557.3 mRNA downstream 404910 28966485 ~ 28995105 (-) False usp7
XM_007245556.3 mRNA downstream 404910 28966485 ~ 28995105 (-) True usp7
XM_007245559.3 mRNA downstream 410351 28966485 ~ 28989664 (-) False usp7
XM_022677733.1 mRNA downstream 456925 28934626 ~ 28943090 (-) True ptx4
XM_022676002.1 mRNA upstream 212127 29613486 ~ 29643240 (-) True emp2
XM_007245571.3 mRNA upstream 356328 29757687 ~ 29761252 (-) True dexi
XM_015604861.2 mRNA upstream 476682 29878041 ~ 29880914 (-) True socs1
XM_022676078.1 mRNA upstream 487440 29888799 ~ 29892305 (-) True LOC111193878
XM_022676086.1 mRNA upstream 541064 29942423 ~ 29960792 (-) True tmc5
TU18940 other downstream 2370098 27023513 ~ 27029917 (-) False fam214b
TU18929 other downstream 2497302 26899005 ~ 26902713 (-) True G14113
TU18930 other downstream 2497302 26899005 ~ 26902713 (-) False G14113
TU18787 other downstream 2566417 26830021 ~ 26833598 (-) False fam109a
TU18746 other downstream 2701222 26678281 ~ 26698793 (-) False G13960
TU19514 other upstream 212253 29613612 ~ 29643303 (-) False emp2
TU19553 other upstream 356328 29757687 ~ 29761226 (-) False dexi
TU19597 other upstream 487876 29889235 ~ 29890576 (-) False LOC111193878
TU19677 other upstream 859659 30261018 ~ 30268350 (-) True rps15a
TU19826 other upstream 1488247 30889606 ~ 30892648 (-) False LOC103045124

Expression Profile