RNA id: TU19510


Basic Information

Item Value
RNA id TU19510
length 225
lncRNA type sense_over
GC content 0.45
exon number 2
gene id G14526
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 29405159 ~ 29422855 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aaggaccaaccacatccaacaggattaactgtggacgctgtaagaggaagctgtctgaaagggatgttcgggtgctaacccggattgtatccaaaaaaacataaaaccacggctgatcaaatcacgcagaattcaatgtgcccctcaactctcctgtttccaccagaactgtccgtcaccacaatcaattattgtgctctaaaaccaggtgtttcagtttcattg

Function

GO: NA

KEGG:

id description
ko04966 Collecting duct acid secretion

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19509 lncRNA downstream 3800 29400015 ~ 29401359 (-) True G14525
TU19500 lncRNA downstream 6068 29395916 ~ 29399091 (-) False G14522
TU19498 lncRNA downstream 6375 29396372 ~ 29398784 (-) True G14522
TU19503 lncRNA downstream 6993 29395160 ~ 29398166 (-) True G14523
TU19493 lncRNA downstream 100451 29302247 ~ 29304708 (-) True G14517
TU19518 lncRNA upstream 138943 29561798 ~ 29611474 (-) True G14534
TU19525 lncRNA upstream 170949 29593804 ~ 29600294 (-) True G14541
TU19556 lncRNA upstream 346051 29768906 ~ 29773096 (-) True G14567
TU19569 lncRNA upstream 412462 29835317 ~ 29862563 (-) True G14578
TU19623 lncRNA upstream 615629 30038484 ~ 30038708 (-) True G14620
XM_007245558.3 mRNA downstream 410054 28966485 ~ 28995105 (-) False usp7
XM_007245557.3 mRNA downstream 410054 28966485 ~ 28995105 (-) False usp7
XM_007245556.3 mRNA downstream 410054 28966485 ~ 28995105 (-) True usp7
XM_007245559.3 mRNA downstream 415495 28966485 ~ 28989664 (-) False usp7
XM_022677733.1 mRNA downstream 462069 28934626 ~ 28943090 (-) True ptx4
XM_022676002.1 mRNA upstream 190631 29613486 ~ 29643240 (-) True emp2
XM_007245571.3 mRNA upstream 334832 29757687 ~ 29761252 (-) True dexi
XM_015604861.2 mRNA upstream 455186 29878041 ~ 29880914 (-) True socs1
XM_022676078.1 mRNA upstream 465944 29888799 ~ 29892305 (-) True LOC111193878
XM_022676086.1 mRNA upstream 519568 29942423 ~ 29960792 (-) True tmc5
TU18940 other downstream 2375242 27023513 ~ 27029917 (-) False fam214b
TU18929 other downstream 2502446 26899005 ~ 26902713 (-) True G14113
TU18930 other downstream 2502446 26899005 ~ 26902713 (-) False G14113
TU18787 other downstream 2571561 26830021 ~ 26833598 (-) False fam109a
TU18746 other downstream 2706366 26678281 ~ 26698793 (-) False G13960
TU19514 other upstream 190757 29613612 ~ 29643303 (-) False emp2
TU19553 other upstream 334832 29757687 ~ 29761226 (-) False dexi
TU19597 other upstream 466380 29889235 ~ 29890576 (-) False LOC111193878
TU19677 other upstream 838163 30261018 ~ 30268350 (-) True rps15a
TU19826 other upstream 1466751 30889606 ~ 30892648 (-) False LOC103045124

Expression Profile