RNA id: TU19518


Basic Information

Item Value
RNA id TU19518
length 990
lncRNA type sense_over
GC content 0.52
exon number 2
gene id G14534
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 29561798 ~ 29611474 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tcaaatctaaagtcagtgcagttttgttttcccacaaaatcttacagcacttcatatcttgcagcttccctctgctactgacaacttttatggaggcgcagatttcattttccagcaggacttggcacactgccaaaaataccaattggtcttatagaatattctaaatttctgagacactgatttgtgggtttctattggctgtaagccataatcaacaacaataaaaatgtgtttaatacatctatataatatatgagtttcacattttggaactgaattactgaaataaagtaactttttaacaatattcttttttttttttgagatgcacttgtactgtatatctgaTGATCTTAATTGTATTGCGATTGTATGCGCCACATCATACTTGAAGCTGAACAAATCAACATGGCAGGATGTCTGTTTTCAATGTGCctttgtgtgaaagtgtgtattAGTTCTTTAGCCAATTTCTAATTATACTGCATGTTGTATGTTACTTAACATTTAGAGAACCATCAATagtgaaagaaaaacaagtcaGCTTcaaattacactgacatgccaaaagtcatgggataagaGGATGTAAATGGATTGATCATAAAGACGTTACCCAAGGGAAAAGCGCCCACACTTagtgccatatatatatatatatatatatatatatagaccctCATTTCACTCACACCTTGCTGAATGTTGTCTGGTTTATCCACTTTATCAAGCACTATTCCGGTGTTCGTTACGGCCCTTAATTCTGATTTTTTGCCTGCCCTTTGCTACTGTCTTCTTGTGTATGACCCCTGTGTATGTTTTCTCTGTCTGGCTACTGTTTACCGGTATTAACCCTGCTCGTTTTGATTACGCATTATATTGTTAGTtttggaacaccattgcacatGAGTTAGTAattaatattcacactgcttgttaggatttttttggtttcagacatcttttggatagtTAAACATGCACCAG

Function

GO: NA

KEGG:

id description
ko05205 Proteoglycans in cancer

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19510 lncRNA downstream 138943 29405159 ~ 29422855 (-) True G14526
TU19509 lncRNA downstream 160439 29400015 ~ 29401359 (-) True G14525
TU19500 lncRNA downstream 162707 29395916 ~ 29399091 (-) False G14522
TU19498 lncRNA downstream 163014 29396372 ~ 29398784 (-) True G14522
TU19503 lncRNA downstream 163632 29395160 ~ 29398166 (-) True G14523
TU19556 lncRNA upstream 157432 29768906 ~ 29773096 (-) True G14567
TU19569 lncRNA upstream 223843 29835317 ~ 29862563 (-) True G14578
TU19623 lncRNA upstream 427010 30038484 ~ 30038708 (-) True G14620
TU19670 lncRNA upstream 533980 30145454 ~ 30225112 (-) True G14660
TU19671 lncRNA upstream 574342 30185816 ~ 30229401 (-) False G14660
XM_007245558.3 mRNA downstream 566693 28966485 ~ 28995105 (-) False usp7
XM_007245557.3 mRNA downstream 566693 28966485 ~ 28995105 (-) False usp7
XM_007245556.3 mRNA downstream 566693 28966485 ~ 28995105 (-) True usp7
XM_007245559.3 mRNA downstream 572134 28966485 ~ 28989664 (-) False usp7
XM_022677733.1 mRNA downstream 618708 28934626 ~ 28943090 (-) True ptx4
XM_022676002.1 mRNA upstream 2012 29613486 ~ 29643240 (-) True emp2
XM_007245571.3 mRNA upstream 146213 29757687 ~ 29761252 (-) True dexi
XM_015604861.2 mRNA upstream 266567 29878041 ~ 29880914 (-) True socs1
XM_022676078.1 mRNA upstream 277325 29888799 ~ 29892305 (-) True LOC111193878
XM_022676086.1 mRNA upstream 330949 29942423 ~ 29960792 (-) True tmc5
TU18940 other downstream 2531881 27023513 ~ 27029917 (-) False fam214b
TU18929 other downstream 2659085 26899005 ~ 26902713 (-) True G14113
TU18930 other downstream 2659085 26899005 ~ 26902713 (-) False G14113
TU18787 other downstream 2728200 26830021 ~ 26833598 (-) False fam109a
TU18746 other downstream 2863005 26678281 ~ 26698793 (-) False G13960
TU19514 other upstream 2138 29613612 ~ 29643303 (-) False emp2
TU19553 other upstream 146213 29757687 ~ 29761226 (-) False dexi
TU19597 other upstream 277761 29889235 ~ 29890576 (-) False LOC111193878
TU19677 other upstream 649544 30261018 ~ 30268350 (-) True rps15a
TU19826 other upstream 1278132 30889606 ~ 30892648 (-) False LOC103045124

Expression Profile