RNA id: TU19525


Basic Information

Item Value
RNA id TU19525
length 651
lncRNA type inter_gene
GC content 0.45
exon number 5
gene id G14541
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 29593804 ~ 29600294 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ggctgctgctgCTTTTTCTGGTGCAACTCTTTTCTTATAAACGCAAAAGCTGCATCCCCTCTTCGCTTGATCTTTTTAACATGTGcCCCCAGTTTTTTGAGCCTTGCATCATATTTAGGTTCACTGTCTATCTCCTGAATTCTCTCCATCAGAGCTTTCATCATCGTGTCAGACCTTTCAACAGCTGCACGCACCTCATGGGAGACCATCCTTCGAACCTCAACTTTAGAGAGTGCTGCAGAGGTTGCCCCACAATCAAACAATTCCTCGTCAGGTCTCctccttttcattttttCTGTAACTGATATAAAAAGCGgataataatgtaaaatctgTAGAGTGATCTGTGTCTGTAGCTCCGCGTTTTCCTGCACACAGCCTGACTGGGGAAAAGAAGGAGGGGCTCAGTGGAAGCAGCTCCACTTCACCAACATACAACCAGGTGTGGATGCTGCTGACACAGATACTACTACAGTCCTGTAGTATCAGTCCTGTAGTGTCAGTCCTGAAGTATCTGTCCTGCTCCCAGTCCTGTAGAATCCCTCATGAATGTCTTTCTTTTTAAgtatatacaaaacatattttaataacgGATAGTTGTAATATaactaaacacaaacatatgGAAGCCTAAGGAAGCCCATTTCTGCC

Function

GO:

id name namespace
GO:0099568 cytoplasmic region cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19510 lncRNA downstream 170949 29405159 ~ 29422855 (-) True G14526
TU19509 lncRNA downstream 192445 29400015 ~ 29401359 (-) True G14525
TU19500 lncRNA downstream 194713 29395916 ~ 29399091 (-) False G14522
TU19498 lncRNA downstream 195020 29396372 ~ 29398784 (-) True G14522
TU19503 lncRNA downstream 195638 29395160 ~ 29398166 (-) True G14523
TU19556 lncRNA upstream 168612 29768906 ~ 29773096 (-) True G14567
TU19569 lncRNA upstream 235023 29835317 ~ 29862563 (-) True G14578
TU19623 lncRNA upstream 438190 30038484 ~ 30038708 (-) True G14620
TU19670 lncRNA upstream 545160 30145454 ~ 30225112 (-) True G14660
TU19671 lncRNA upstream 585522 30185816 ~ 30229401 (-) False G14660
XM_022675956.1 mRNA downstream 10542 29311410 ~ 29583262 (-) True grin2a
XM_007245558.3 mRNA downstream 598699 28966485 ~ 28995105 (-) False usp7
XM_007245557.3 mRNA downstream 598699 28966485 ~ 28995105 (-) False usp7
XM_007245556.3 mRNA downstream 598699 28966485 ~ 28995105 (-) True usp7
XM_007245559.3 mRNA downstream 604140 28966485 ~ 28989664 (-) False usp7
XM_022676002.1 mRNA upstream 13192 29613486 ~ 29643240 (-) True emp2
XM_007245571.3 mRNA upstream 157393 29757687 ~ 29761252 (-) True dexi
XM_015604861.2 mRNA upstream 277747 29878041 ~ 29880914 (-) True socs1
XM_022676078.1 mRNA upstream 288505 29888799 ~ 29892305 (-) True LOC111193878
XM_022676086.1 mRNA upstream 342129 29942423 ~ 29960792 (-) True tmc5
TU18940 other downstream 2563887 27023513 ~ 27029917 (-) False fam214b
TU18929 other downstream 2691091 26899005 ~ 26902713 (-) True G14113
TU18930 other downstream 2691091 26899005 ~ 26902713 (-) False G14113
TU18787 other downstream 2760206 26830021 ~ 26833598 (-) False fam109a
TU18746 other downstream 2895011 26678281 ~ 26698793 (-) False G13960
TU19514 other upstream 13318 29613612 ~ 29643303 (-) False emp2
TU19553 other upstream 157393 29757687 ~ 29761226 (-) False dexi
TU19597 other upstream 288941 29889235 ~ 29890576 (-) False LOC111193878
TU19677 other upstream 660724 30261018 ~ 30268350 (-) True rps15a
TU19826 other upstream 1289312 30889606 ~ 30892648 (-) False LOC103045124

Expression Profile