RNA id: TU19569


Basic Information

Item Value
RNA id TU19569
length 774
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G14578
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 29835317 ~ 29862563 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTCTTTAATATCTGTTGGTAAAGGAACTGTAATCGATTAAAAGCAGATTGCGATTTACACAGCGTACAGAAACAGCTCATTTCAcacaattgttttttaattttttttcattgttcttttttttttgttctcttccACAGGGTTGAAATTGACATTAGAGTGAAAATACTGCAATAAGTTCACACAATTTACTGTATTGCTCTTAAGATTAATGTTTTACAAAATCTGCCCACATTTCTTTACAAATAACTCAAATCAATAACTCTTCCAGAGAGGAAAATTCAATATTCAGctagttttttaatttttttttttttttttttagcttaatcATAGCTTTCCCGGGTTCGTCAGCTGAGCAGCAGAGGATTATGCCCTTTCTAGCTGCTACTGTTTGATCCGTGATTGAATTTTAAATATCGGCCAATTTCTAGTTCTAGTTCTAGTTCTAAAAATAAACAGCTGTTATTGCACTTTATTGACTTTTAACTTGGTGCTGCCAGAACAAGCGGTTTCTGAGTTAATTCCAGTAGGATTTAGAGATTTTAGTGCACTTTACACGTGATTTTATCATTCTTAACGTAAGAATCAGTCAGTACACTGAGGAAATTAAAGAATTAATGAAgaattaaagcatttttcaGAAGGCGTCTTCTTCTGCTAGTTCTTGTGCGGATTGATAACTTCAGCCTGCTGGATCAACGGCTGTTTGACTATGTTAACAGATTTTAGTTTAGTCActataaaaccttaaaaaaaacaacaaaaaaaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19556 lncRNA downstream 62221 29768906 ~ 29773096 (-) True G14567
TU19518 lncRNA downstream 223843 29561798 ~ 29611474 (-) True G14534
TU19525 lncRNA downstream 235023 29593804 ~ 29600294 (-) True G14541
TU19510 lncRNA downstream 412462 29405159 ~ 29422855 (-) True G14526
TU19509 lncRNA downstream 433958 29400015 ~ 29401359 (-) True G14525
TU19623 lncRNA upstream 175921 30038484 ~ 30038708 (-) True G14620
TU19670 lncRNA upstream 282891 30145454 ~ 30225112 (-) True G14660
TU19671 lncRNA upstream 323253 30185816 ~ 30229401 (-) False G14660
TU19681 lncRNA upstream 355260 30217823 ~ 30221528 (-) True G14670
TU19683 lncRNA upstream 395855 30258418 ~ 30258877 (-) True G14672
XM_007245571.3 mRNA downstream 74065 29757687 ~ 29761252 (-) True dexi
XM_022676002.1 mRNA downstream 192077 29613486 ~ 29643240 (-) True emp2
XM_022675956.1 mRNA downstream 252055 29311410 ~ 29583262 (-) True grin2a
XM_007245556.3 mRNA downstream 840212 28966485 ~ 28995105 (-) True usp7
XM_015604861.2 mRNA upstream 15478 29878041 ~ 29880914 (-) True socs1
XM_022676078.1 mRNA upstream 26236 29888799 ~ 29892305 (-) True LOC111193878
XM_022676086.1 mRNA upstream 79860 29942423 ~ 29960792 (-) True tmc5
XM_022676097.1 mRNA upstream 398478 30261041 ~ 30267783 (-) False rps15a
XM_022676131.1 mRNA upstream 811497 30674060 ~ 30704600 (-) False LOC103043612
TU19553 other downstream 74091 29757687 ~ 29761226 (-) False dexi
TU19514 other downstream 192014 29613612 ~ 29643303 (-) False emp2
TU18940 other downstream 2805400 27023513 ~ 27029917 (-) False fam214b
TU18929 other downstream 2932604 26899005 ~ 26902713 (-) True G14113
TU19597 other upstream 26672 29889235 ~ 29890576 (-) False LOC111193878
TU19677 other upstream 398455 30261018 ~ 30268350 (-) True rps15a
TU19826 other upstream 1027043 30889606 ~ 30892648 (-) False LOC103045124
TU19827 other upstream 1027043 30889606 ~ 30892648 (-) True LOC103045124
TU19828 other upstream 1027043 30889606 ~ 30892648 (-) False LOC103045124

Expression Profile