RNA id: XM_022676078.1


Basic Information

Item Value
RNA id XM_022676078.1
length 1498
RNA type mRNA
GC content 0.48
exon number 4
gene id LOC111193878
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 29888799 ~ 29892305 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGATGACGTGTAACTAGTTCCGGTTTTTTGAGGGTGCGTGTGTATAGTTCCGCTCCGGTACACAGGATAGACGCGCAGAAGTGAAGATGGCTGTGTTTTACACGAGGTGCCTCCAAGACCTTCCGAAAATTACCATCACGGATGTACACCGGATAGTCCAAGCGGCCAGCTCAACCCCGAGGAGCAAAAGGGAGAAAGGATATAAGATGTATATATCCAGTTACATCGACAACTATGAAGATTGTCTTTGAAGACAGTGTACCAGTGGACATTGCAGTGGCAGAGTGCTCCTGTGTGGCTGGGACAGCCCTCTGCAACCACAATGTTGCACTACTGTTCCAGACTGCGCACTACTCCACACTGAACCTGGCTGCTGTACCCCCAGTCCTAAGCTGCACAGAAACAGAACAACGCTGGCACAAGCCAAGAACCATGGGTGTAAAACCAGGCCGCGTGAGTGACATGGTGTTCTTATCCTCCAAGCCAAAGCAGTTTACAGTTGCTGATGGTGTAAGGAGTAAACGTTACAAGGCAGTGCGAGGGGAGCTGCCAGATCCAGATGTCCTTAAAGTTGATGAGCAGTACCAGGACTTCACTGCAGACATCGCTCCACTCATCACCACCATGGCCATAAGTGCAGATGTCCCGCTGGTTGATTCAGCTTTTGGGAAAGTCCAGGCGGGTAGCCCCATCTCCTACCAGCATCCAGTACCAGTGAGCCGGGTTGTTGTACGCCATCCAGATGCCCCTCTGCCACCACCTTTACCTGTAGACGGTTATAGGCTGGAGCCTACTAACTGCCAGTTTGTGTGCACTCACCAACAACACCTCCATCTGCAGTCACTTGCCACTACATTTGACATGGCAAGGAAAATAGAGGTTGCCACCAGGGAGCAGAGCAACTCTGTGGAGTGGCACCGAGTCAGGAGGCCAAGAATAACTTCCTCCCGATTCAGGGAAATATGCCATGTCAGAGGTCAGAGTTCTGCAGAAATCCTGTCACAAAGGATTCGAAAGGGAGTGGATCAAACTGCTGCAATGAAGAGGGGATTGGCACTGGACGCTGCTCCGATTCTGGCCCACAGCCAGACAGGGCGGAGCCTACTGGACATGACGGCATGAGAATGaggtctctcagccaatcaggtggcgagctCGGCCAGCTGAGAGGCTAAGGAAGAGAGATGCTTGGCCATAGATACTTTATCTAATAGATTTTCCACTGAGCAGAACAAccgctcttaaagagacagtgcggatttctgtttgtatatgagtagaccacacaaaaacccagagtttactgcaaaatgagttataaaagtggtattttttattcttataaagtttccagtcctttggagaaagaaaagaccatTACTGGTTCAAATCACTATAACTTCTAACCAGTAATAGGTAgcagtttaaaattttatatgatgattgtaaacacattatagtaaaatatagagtTGTCAAAACCcttcatccatataaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19569 lncRNA downstream 26236 29835317 ~ 29862563 (-) True G14578
TU19556 lncRNA downstream 115703 29768906 ~ 29773096 (-) True G14567
TU19518 lncRNA downstream 277325 29561798 ~ 29611474 (-) True G14534
TU19525 lncRNA downstream 288505 29593804 ~ 29600294 (-) True G14541
TU19510 lncRNA downstream 465944 29405159 ~ 29422855 (-) True G14526
TU19623 lncRNA upstream 146179 30038484 ~ 30038708 (-) True G14620
TU19670 lncRNA upstream 253149 30145454 ~ 30225112 (-) True G14660
TU19671 lncRNA upstream 293511 30185816 ~ 30229401 (-) False G14660
TU19681 lncRNA upstream 325518 30217823 ~ 30221528 (-) True G14670
TU19683 lncRNA upstream 366113 30258418 ~ 30258877 (-) True G14672
XM_015604861.2 mRNA downstream 7885 29878041 ~ 29880914 (-) True socs1
XM_007245571.3 mRNA downstream 127547 29757687 ~ 29761252 (-) True dexi
XM_022676002.1 mRNA downstream 245559 29613486 ~ 29643240 (-) True emp2
XM_022675956.1 mRNA downstream 305537 29311410 ~ 29583262 (-) True grin2a
XM_007245556.3 mRNA downstream 893694 28966485 ~ 28995105 (-) True usp7
XM_022676086.1 mRNA upstream 50118 29942423 ~ 29960792 (-) True tmc5
XM_022676097.1 mRNA upstream 368736 30261041 ~ 30267783 (-) False rps15a
XM_022676131.1 mRNA upstream 781755 30674060 ~ 30704600 (-) False LOC103043612
XM_022676127.1 mRNA upstream 781755 30674060 ~ 30704600 (-) True LOC103043612
XM_007245587.3 mRNA upstream 989799 30882104 ~ 30884340 (-) True LOC103032739
TU19553 other downstream 127573 29757687 ~ 29761226 (-) False dexi
TU19514 other downstream 245496 29613612 ~ 29643303 (-) False emp2
TU18940 other downstream 2858882 27023513 ~ 27029917 (-) False fam214b
TU18929 other downstream 2986086 26899005 ~ 26902713 (-) True G14113
TU19677 other upstream 368713 30261018 ~ 30268350 (-) True rps15a
TU19826 other upstream 997301 30889606 ~ 30892648 (-) False LOC103045124
TU19827 other upstream 997301 30889606 ~ 30892648 (-) True LOC103045124
TU19828 other upstream 997301 30889606 ~ 30892648 (-) False LOC103045124
TU19838 other upstream 1022605 30914910 ~ 30923249 (-) True G14781

Expression Profile