RNA id: TU19681


Basic Information

Item Value
RNA id TU19681
length 3593
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id G14670
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 30217823 ~ 30221528 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCTAGTACTACTTAGTACTACAGTGCAGTGGATAGGGCCAAGCTACGGTTTCTATTGGTTCTATTGGTTTACAATACAACTTcattgttcattggctggtttatggtctattctaatgtccattgcaatggatgcagggtctgaaagggttaagatgAGTATCTCTTAATAGccaacagctcatttttttttttcacccaagTTAACACTGACCTCCAAAATGCTATACAGATGTTCTGgtgctaaaaacataaaataatgctGCAAAAATGGTCTAGGTTCAACTTATGCAACACTGACCTCTATACTACTAAACGGCTGAGCACAGTAAGTTCTCCAATAAGGTCTTCCAGGCTTCTTATAGGAGCTTTGGTTCGGAGATCATCTAGTTCTCCAGAAGTTCCAATAAATGGCCTACAGCTCAGGTTTACAACCTCCACACTGACCTCCATACAGCTGAATTATTACACTGCTGTTTAAAATAAGTATAGtcgtttaaaaaaatgttctccaGGGACTTTTTCAGGTCTGCTACCAGAGCTTTTGTATGAAAATGTCCTCCATTAGTTTCTGTGGACTGTAGCACTGATCTCCAAAGTACTGTATGGGAGTTCTGGTGCCGAAAACACTAAAAAATTATAAGCAGCAGAAGCACAATGTCTTAgtgggaggatttcaccccttacactcgaaaacaagggtAGGGGCTAAGGGGTAAATCTGACACTTCATTCTGGGTTCAACCACTTCTGTGAAGATGAGTGAAAATACAAACTAAGAAGCTGCTAAAACgtagtgttttaaaataaaaaaaaaaaaaaaaggaaatcaacaTCAACGTTTTTTTCAGGGCTTTTTCTTCTAGGTCTGCATTAAAGCTTTAGAGATGATGtccagaagtttttttttttttCCTCAGATCAGCAGAagaacaacacaatacaatacttTCAGAGTCTTCCAAGCATCAAGTACATCAAGATGAACCTCAGGGAAGGTGAAGGTGAAGGAATGTAATATAAGAATCGAGCGTGTttgtctttatttctctttatttctcatttttgtaaagttttataGAGTTCTACGTTCGGGGTGCTTTGGCCTTTGTAAATAAAGGCAGCTTGCTTACAAAAAAAGGTATTGATcgagctgcaaaaacagcataTAGACATTAGTCATTGACTAAAAAAATACCCATTTCATTTATATAAACACATGAATAAATAGCCAGCTCAGTCCCCCTCACCCTAACACAGTAAATCTTCCGCttcagggggaaaaaaataaaataacagaataatatatatattttttaaatttattgatatttttttgatcattattttttttaatcccccCCTCTGTGTGCCAGCACAGCTGACACCTTCCGTTTCAAGTCAGGCAGCCTGCAGGCGACAGCATGTCGTACAGGCAGGCAGAGTTCAGAAAgctgatagagagaaagagagagaaaagagagagagagagagagtgaaagagagaaaaaaaagagagagagaaagagagagagaggcagcccGGCAGGTCAAAGAAGcgtctctcgctctgtcttgcACTGGTGGAAATGTGGGAGTGTGGCCTTGTTCAACTCTACTTGGCAATACATCCAacattcacatatatatatatattatatatatatatatatatatatatatatgtaggcGAGCCCATGAAGCACTGCTTCAGTGTATTACTGAGCAGTAACTCATGGGCTAATCAGTAGAGTCAGAAGagaaattccaccaaatatcccCCCAAAAAATCCCAATCTTCCAAAAAAGATCCTGCGTAATTGATTTAGTTCAATTCAGAGTGGGTTAGGTGTGAAATTGTGGTTCATTttgaagaaatatataaaaaaaaacagatttgtttattataCTGGTTGTGAATGGAACAAGGCTTCAGGACATTCAGTGATATATGTGGTGTATGTGACCCAGTGatcctaccaccaccatgtgttttatacagtatgtaatgtcaataaaggtaaaataaacgtaaatataaacaattatGCTTTTTGTTAGGGACtctctgtatttaaaaaatgcccTGCATGTGTGTACACCTATTGGGatatacatatttttctcaGGGAAACTCTAAGCTTAAATACTGGCCAATCACACAGGGGTGTGCCATGttgtatcatacgcaataatatgaccaaatatttttgaatattgtgattatgatattacaccctgaaataccctaattatcacatctgGGTACTacttgtttttgctgtttttagtaaaatgcaaaagtaaaatgcattatatatctactagagactagagattatatctgtctagcATCATTTATCTTACTTTTCCCATGAGTAATTatataacctgtacaactgtaattaatctgtaataAGGTGTACTTAACTAGTAGTTCACTggtaattacactgttattacatggattgttaatgtgtaattattagttattatattaGAGACAATTATCATTAATCTAAGCTTCAAAGGTTcaacttaaaaatgtactttgatcAGTTGTGGCCAAAATAAATTAGACTTAACGGAATTGACACTTTTTTGAGGTTTTGATCCATTCACCACCAGTGTGATCAATTCTCACTGTGATCATTCATCATTTCACACCAATCCCTCTCTGAATTACCTTTTTTTATCTCAGCTACTTATTCAGCTAATTATACGCAGATATCTCAGATATTTGAGTGGAATTTCCCCTCCctctgttattttagtgtgtttttgttattattttgcatCGTAAAAGACACAAAAAGCTTGCTGCAGAAGCTCCGCCTTTTGGTCACACCACCAACGTTTAGGTCCGTTCTGTGCTTTTCaaagaccttttttttaaaaatatgatttctgattTTTGATTTCGAGCGTCCAGCAGCGAAGGCATCTCGTTCTCGTCTGTTTAAGGTTCAGTCACAGTTATTTCAGTTTTCaaacctaaaataaataagaggaGAAAAGCTGGACAGCACTCACAGCACTACAGGTACAGCGCCCGCAGCGAGAATCCCGGCGTAAAGTTCTCGGCGCGCGAGCTCTCGCGCCCCCGCTGGGCGGATGGCGCCGTGTCCGAGAGCCGAGGAGGGCGATCACACTCAGATTGGTATGAGTGACGGTACAAAAccagagagaaataaaataaataagaaccgTAAGATGAACTAACAGCACAATCAGGTGTGGCAGGTCTCAGCGGGAGCCGCGGCGGCTGCTGCTACCTGATCCTGCCGTTGGCTCTGGGCGAGCCCAGCTGAGATTTAGGGTCCGGGCTGAGGGAGCTCCAGGACGTCTCCCGGCACGTCTGCATGACGGGGCAGCCGCTGGGGGCCGTGGAGCACACGTCCACCGCCGACCACACGTCCCCCACCAGCCCGTCCACCCAGCGCTCCAGCTTGGCGCCGGTCAGCCCGGCGTTGTGCTCGGCCGCCTCCACCTCGCCCAGGTGCACCGGGATGTTCAGGATGGGGTTGAGCCCGTGGAAGCTCTGCTCCATGTAGCTGTTCTTAGCCGGACCGTTGTGCATCTTCAAGGCGTCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19623 lncRNA downstream 179115 30038484 ~ 30038708 (-) True G14620
TU19569 lncRNA downstream 355260 29835317 ~ 29862563 (-) True G14578
TU19556 lncRNA downstream 444727 29768906 ~ 29773096 (-) True G14567
TU19518 lncRNA downstream 606349 29561798 ~ 29611474 (-) True G14534
TU19683 lncRNA upstream 36890 30258418 ~ 30258877 (-) True G14672
TU19706 lncRNA upstream 202544 30424072 ~ 30424287 (-) True G14694
TU19736 lncRNA upstream 440291 30661819 ~ 30666449 (-) True G14718
TU19738 lncRNA upstream 450524 30672052 ~ 30672469 (-) True G14720
TU19766 lncRNA upstream 452533 30674061 ~ 30725921 (-) False LOC103043612
XM_022676086.1 mRNA downstream 257031 29942423 ~ 29960792 (-) True tmc5
XM_022676078.1 mRNA downstream 325518 29888799 ~ 29892305 (-) True LOC111193878
XM_015604861.2 mRNA downstream 336909 29878041 ~ 29880914 (-) True socs1
XM_007245571.3 mRNA downstream 456571 29757687 ~ 29761252 (-) True dexi
XM_022676002.1 mRNA downstream 574583 29613486 ~ 29643240 (-) True emp2
XM_022676097.1 mRNA upstream 39513 30261041 ~ 30267783 (-) False rps15a
XM_022676131.1 mRNA upstream 452532 30674060 ~ 30704600 (-) False LOC103043612
XM_022676127.1 mRNA upstream 452532 30674060 ~ 30704600 (-) True LOC103043612
XM_007245587.3 mRNA upstream 660576 30882104 ~ 30884340 (-) True LOC103032739
XM_007245623.3 mRNA upstream 668078 30889606 ~ 30892633 (-) False LOC103045124
TU19597 other downstream 327247 29889235 ~ 29890576 (-) False LOC111193878
TU19553 other downstream 456597 29757687 ~ 29761226 (-) False dexi
TU19514 other downstream 574520 29613612 ~ 29643303 (-) False emp2
TU18940 other downstream 3187906 27023513 ~ 27029917 (-) False fam214b
TU18930 other downstream 3315110 26899005 ~ 26902713 (-) False G14113
TU19677 other upstream 39490 30261018 ~ 30268350 (-) True rps15a
TU19826 other upstream 668078 30889606 ~ 30892648 (-) False LOC103045124
TU19827 other upstream 668078 30889606 ~ 30892648 (-) True LOC103045124
TU19828 other upstream 668078 30889606 ~ 30892648 (-) False LOC103045124
TU19838 other upstream 693382 30914910 ~ 30923249 (-) True G14781

Expression Profile