RNA id: TU19838


Basic Information

Item Value
RNA id TU19838
length 2304
RNA type TUCP
GC content 0.52
exon number 10
gene id G14781
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 30914910 ~ 30923249 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgactttaaattggaaataatataatttatcccaataatttctgggacaatatatcgtccacaaaaaaatggTATCGAGACAGACCTGCAGGTGTCTGATGTTCCTTTATGTAATCGCTTTTATCACACCagtgtgtttattaaaagacaAACTTTATTATTCATGGTTCGccattaaaatgagttaaaaccACACTGATATATTTACACTATGAATATATTGTTTACAACACAAAACAATActttaacaaaacaataaaaatatccaacaaaaattacacaaacattacaaaaaaaactgctcCAGCTGCAGACTCAGATCAGCGGCAGCCCAACGAACGACTCGTTATATTTCTCCATGGTTTTGAGCGAGCGGCGGGACTTCTGCTTGAAGATGGGGGAGCGCAGGAACTGGGTGTCCGTGAATTTATCTCCACGGCGAAGCTTCGAGCTAATCGATGGCTCCTTGTAATTGACGCTACTACTGCAGCGTCTCCTACGGCCGGCAGCGGGGGTGGAGTCTCGGCCAGGCAGAGGCTTCTGATAGGCTTTTCTCCTTTTAGATTTATCCATCAGAACAGGCATGTTATTCTCCTGCTCGGAGGATTGGCTCGGGCAGGTTGCCAGGTCAAAGAAAGGGCTGTCGATCATCAGCTCTGCCTCCTCAGCAGGATTTACAGGCAGTGGAGATGCGGTTGCCAGTTCAAAGAAAGGACTGTCGATCATCAGCTCTGCCTCCTCAGCAGGATTTACAGGCAGTGGAGATGCGGTGTCCAGCTCAGGGGAGGGAGCTTTATTAGTCTTTAGGCTTGGGGTTGACTCCTTGAAATTTTCAGGAGGCAAAATATAGGGGACTCTGGGAAAAGCAGGCCTGTATCCGGGGATTGTGGGAGATGTTGTCCTGTACGGGTCGGTAGAGCATCGTTCGAGGCTGAACCACACGTTTTGCTgacttCTGTGTTCTCAGAGGTAGTGCGGGGCTTCTTCGGGGGTGCGTTCTCTTTCCCCTTTCTCTGAGTGGACCTTCTCTTGGACCGTGCTCGTCTGGGTGGTGGGCTTCGAGCTCGTCTGAGCTTCTTCTCCGGAACGTACAGACTGTCGTCCGCTTCCTTTTCAGGTTCAGAGGGACTTGATTCCACCTCCATAGTGACAGGAGAGGGAGGGGCAATAGGAGAGGGCGGGGCCTTCTCCGGCTGGTTCTCTGACGCTTTGCTGCCGGCTCTGAAGGGCGTGATGTGGACCGCCTCTTCACAGTCAAAATCGAACGTATCGTTGCCCCCCAGAGAGGAGTTGAGACGGTCGGATGGCACTGGTGCCGTTTGGGCTCGGGTGCGTGAGCGGTCCCGGCTCTTGGAGCGCGCTCGTGGCTTTGTGTTCTCCCACGGCTTCTTCAGAGGGGCGCGGTCCGGCTTGCGACCCCTCTCGGGTTTGGAACGTGGGGCGACCTGGGTGTTCTTCTTCTTGGTCTGCCTGGAGACGTTGCGCTGAGGCGGCTCTGGAGTCGAGTGCTTGACGGCTGATATCTCAGGAGGTTCTGAGTCCAGCCCTGGTTTGGAGCCGTCAGTTGAATTGGGAGGAAGTGGCTTCTGATCTACATTTGCGTCGAGTTTGAGCTCAGGGTCCTGCTCAGAAAGTCCCTCCATCATGTCTGAGGACGGTGGCTCCACCTCTTCTGTGACAGTACCTCCCACAGAGGCAGGGTCGAACAGCGAGCTCCGCCTCCGCAGACGCTCAGATCTTTTCTTTCCATCTCTACGACGCCGCATTCCCACAGTCGCTGGCAAAGAAGCTGGACCATCTTGAGATCCACTGgaaaCAGATTCTGAGGAACCAGCTGGGCAGAGCTCATCATCTTGAGGGACAGTTTCTGCTGTATCTATGGGCTCAGGGCTGGTGGGCTCAGGAAGACTCAACTTCGGCTCATCAGTAGAGGACCCCTGTGCAGGTTTCAGTGCCCCTGCTTCTCTCAGAGCCCTCTTCAGCATCAGCAGGTGGAAAATAAGagcctgcctctctctcttcatctgcAGAATGATGCCCTGCGCTTGCCGTACTTTCTCCCGCTCTGCCTGCAGAGCCAGGGCCAGGGCTTTGTTGTTCACCTGCACGCTCTTCAGCACGAACGGCTTCACTGTTGCTGCATTTTTGTTCTTCAGTTTTGAAAGCCCGCGGCTCGCAGCACTAGCACTAGCGTTTGCCAGCCGCTGGTTTCTTTTTTCCTTCATCTTCTCCTTGATGTCGTCCAGGCTTTGCTGGAACGACTTTTTTTGGACCACCCGCTCCCGGACCATGATGAACCGCTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19830 lncRNA downstream 10212 30904484 ~ 30904698 (-) True G14778
TU19776 lncRNA downstream 147090 30766362 ~ 30767820 (-) True G14748
TU19766 lncRNA downstream 188989 30674061 ~ 30725921 (-) False LOC103043612
TU19738 lncRNA downstream 242441 30672052 ~ 30672469 (-) True G14720
TU19736 lncRNA downstream 248461 30661819 ~ 30666449 (-) True G14718
TU19839 lncRNA upstream 563 30923812 ~ 30924087 (-) True trnap-agg_1
TU19866 lncRNA upstream 1591 30924840 ~ 30928389 (-) True G14807
TU19871 lncRNA upstream 3586 30926835 ~ 30928389 (-) False G14807
TU19905 lncRNA upstream 60291 30983540 ~ 30984031 (-) True G14820
TU19921 lncRNA upstream 125107 31048356 ~ 31048607 (-) True G14834
XM_007245623.3 mRNA downstream 22277 30889606 ~ 30892633 (-) False LOC103045124
XM_007245587.3 mRNA downstream 30570 30882104 ~ 30884340 (-) True LOC103032739
XM_022676131.1 mRNA downstream 210310 30674060 ~ 30704600 (-) False LOC103043612
XM_022676127.1 mRNA downstream 210310 30674060 ~ 30704600 (-) True LOC103043612
XM_022676097.1 mRNA downstream 647127 30261041 ~ 30267783 (-) False rps15a
XM_007245590.3 mRNA upstream 14037 30937286 ~ 30945392 (-) False LOC103033392
XM_007245589.3 mRNA upstream 14037 30937286 ~ 30945392 (-) True LOC103033392
XM_022676182.1 mRNA upstream 23516 30946765 ~ 30954116 (-) True LOC111193890
XM_022676180.1 mRNA upstream 23516 30946765 ~ 30954080 (-) False LOC111193890
XM_022676188.1 mRNA upstream 32944 30956193 ~ 30962532 (-) True LOC103046043
TU19826 other downstream 22262 30889606 ~ 30892648 (-) False LOC103045124
TU19827 other downstream 22262 30889606 ~ 30892648 (-) True LOC103045124
TU19828 other downstream 22262 30889606 ~ 30892648 (-) False LOC103045124
TU19677 other downstream 646560 30261018 ~ 30268350 (-) True rps15a
TU19597 other downstream 1024334 29889235 ~ 29890576 (-) False LOC111193878
trnap-agg_1 other upstream 627 30923876 ~ 30923947 (-) False trnap-agg_1
TU19927 other upstream 130515 31053764 ~ 31055503 (-) True G14839
TU20269 other upstream 1219479 32142728 ~ 32159878 (-) False nfkb1
TU20525 other upstream 1890825 32814074 ~ 32820769 (-) False hopx
TU20526 other upstream 1890825 32814074 ~ 32819171 (-) False hopx

Expression Profile