RNA id: TU19927


Basic Information

Item Value
RNA id TU19927
length 1703
RNA type TUCP
GC content 0.29
exon number 2
gene id G14839
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 31053764 ~ 31055503 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGgacggatggacggatggacagatgaatggatgggCATTAGAGTGATGGGAAATGAAAGAGTGCCTGAATTAGGACGGCTGAGCtttgagttgtttttgatttattattattattattattattattattattattattattattattattattatggtaacactttctatgaatgtcagtTCTACAAGACTCTATAGACATACCCATTACCCATTATAAtacattcataaagcattataaccatgattatacatatttataaaaatgcatcatagtccataatgcattaataactgtgtttataacatcTTATACATAAATACCAAGAACCACAGTCCAAGCTTGTAGACTTGGACTAAGCATtatgacaaaaataattatgtaaatatatttaaagcacTCATAATCTATATTTGTCTTCAATATCATTTTTGTTATAAtcacttataatgtattataacaggtctttttgggctccaagtaaagtgacaggCTTTCATTTAATTGTgagactagattattaatgatagatatgTACCATTTTACTATGTTAACATACTTATAGATATAAGTACAGCTTATAATggattatgatcacaagtcataatgcataataaacctGGATATAATGAGTTACTGTATGCATTGTTTTAAATActtataaccatgtttttaatgccttatgaatgtgtttatagagtctaatagagattaCATTAATAGGAAgtgttactattattattattattattattattattattattattattattattattattattattataattacatgaGTTGAATAGATGGTGAAGATGCTGCAGAAGGACCTGAGCACATGTTTAGTCTGTGCACTGTACTTGTttgtctctttgtttgtttgtttgtttgtttatttatttgttttatcacAGATAAATACTTTGCACTTTCACTCTTACAATTTAATTGTTCTATTTTGGtgttaatgtgttataaatgttcATATGGAGTTTGAATCATGCTGTTGTTATGCCTCAAAAGGAATTATTGAATGATTGCCTAATACCCCCTAATATTgtttatagtatagtgtagacCCCCTTGTGCCTTCATAACAACTAAAGTTTTGGAAGTTGTAAAGTGGGTGGGGCTTAATATGTAAATACCACTAAATCCAAAATGGAACAAAATACCACTAttgcataatataaaaaaaagtctaaatgtactgtattttggtgtgttttagaATTTAttgaacacattattaaaaaatatttttttttataattcgtTTTTTGGGTTTCCAAATTATAAAACATCGGTTAAACAGCATAGATATTAGCAACACATATGATACAAAAACCCTATAAGAGTGAAAGAAGAAGAcaaaagaggaggaaaaaagcAGCACTGAACATTTAACATCAAAGTTAGCTGTCAATGTTCAGTATAAATGATTATAGTTGTGAAAACTTTAGTGCATCCCCAGTTCCCACCCCCTGATAGGTACCATTGGAAACACTCAAATATCCACTGGCTTGATTCTAACTCCATAGAAAGTATCCTGAAGAAATTTGtctgaatctgatttttttttttaaactggtttTGGTCTCAGGTAGATGGTGAACAGGGTGGTACCTAATCTGAGTGGTCTGTATGCAATAAAATTCACTGTAAATTTGCaataaaacaaccaaaaacCAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19921 lncRNA downstream 5157 31048356 ~ 31048607 (-) True G14834
TU19905 lncRNA downstream 69733 30983540 ~ 30984031 (-) True G14820
TU19866 lncRNA downstream 125375 30924840 ~ 30928389 (-) True G14807
TU19871 lncRNA downstream 125375 30926835 ~ 30928389 (-) False G14807
TU19839 lncRNA downstream 129677 30923812 ~ 30924087 (-) True trnap-agg_1
TU19979 lncRNA upstream 125483 31180986 ~ 31193793 (-) True G14876
TU19980 lncRNA upstream 126323 31181826 ~ 31229953 (-) True G14877
TU19982 lncRNA upstream 157066 31212569 ~ 31214056 (-) True G14879
TU19985 lncRNA upstream 200482 31255985 ~ 31256204 (-) True G14882
TU19986 lncRNA upstream 205265 31260768 ~ 31260986 (-) True G14883
XM_022678009.1 mRNA downstream 83606 30967269 ~ 30970158 (-) True LOC103046348
XM_022676197.1 mRNA downstream 86822 30964548 ~ 30966942 (-) True LOC111193897
XM_022676188.1 mRNA downstream 91232 30956193 ~ 30962532 (-) True LOC103046043
XM_022676182.1 mRNA downstream 99648 30946765 ~ 30954116 (-) True LOC111193890
XM_022676180.1 mRNA downstream 99684 30946765 ~ 30954080 (-) False LOC111193890
XM_022676251.1 mRNA upstream 3265 31058768 ~ 31083292 (-) True LOC103047264
XM_015604857.2 mRNA upstream 3265 31058768 ~ 31078424 (-) False LOC103047264
XM_015604858.2 mRNA upstream 3265 31058768 ~ 31075699 (-) False LOC103047264
XM_022676246.1 mRNA upstream 3265 31058768 ~ 31075699 (-) False LOC103047264
XM_007245593.3 mRNA upstream 50805 31106308 ~ 31125146 (-) True LOC103034575
trnap-agg_1 other downstream 129817 30923876 ~ 30923947 (-) False trnap-agg_1
TU19838 other downstream 130515 30914910 ~ 30923249 (-) True G14781
TU19826 other downstream 161116 30889606 ~ 30892648 (-) False LOC103045124
TU19827 other downstream 161116 30889606 ~ 30892648 (-) True LOC103045124
TU19828 other downstream 161116 30889606 ~ 30892648 (-) False LOC103045124
TU20269 other upstream 1087225 32142728 ~ 32159878 (-) False nfkb1
TU20525 other upstream 1758571 32814074 ~ 32820769 (-) False hopx
TU20526 other upstream 1758571 32814074 ~ 32819171 (-) False hopx
TU20527 other upstream 1758571 32814074 ~ 32819171 (-) False hopx
TU20934 other upstream 3079089 34134592 ~ 34136732 (-) True G15497

Expression Profile