RNA id: TU19980


Basic Information

Item Value
RNA id TU19980
length 275
lncRNA type sense_over
GC content 0.46
exon number 2
gene id G14877
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 31181826 ~ 31229953 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

actgactttagacttgataataaaacacagtggatcaacaccagcagatgacagacatgtctctccaaaccatcactgattggtggaaacttcacactagacctcaagcagtttggactgtgtgtctctccactcttcctccagactctgctcccttgatttactttaaatgaaatgtaaaatttactgatgatcagtgatggtttggagcacttcatgcttccctctgctactgacaacttttatggagatgtggatttcattttccagcagga

Function

GO:

id name namespace
GO:0001570 vasculogenesis biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19921 lncRNA downstream 133219 31048356 ~ 31048607 (-) True G14834
TU19905 lncRNA downstream 197795 30983540 ~ 30984031 (-) True G14820
TU19866 lncRNA downstream 253437 30924840 ~ 30928389 (-) True G14807
TU19871 lncRNA downstream 253437 30926835 ~ 30928389 (-) False G14807
TU19839 lncRNA downstream 257739 30923812 ~ 30924087 (-) True trnap-agg_1
TU19985 lncRNA upstream 26032 31255985 ~ 31256204 (-) True G14882
TU19986 lncRNA upstream 30815 31260768 ~ 31260986 (-) True G14883
TU19988 lncRNA upstream 37707 31267660 ~ 31268093 (-) True G14885
TU20188 lncRNA upstream 299384 31529337 ~ 31621297 (-) True G15023
TU20202 lncRNA upstream 615229 31845182 ~ 31876961 (-) True G15037
XM_007245593.3 mRNA downstream 56680 31106308 ~ 31125146 (-) True LOC103034575
XM_022676251.1 mRNA downstream 98534 31058768 ~ 31083292 (-) True LOC103047264
XM_022676307.1 mRNA upstream 650841 31880794 ~ 31943297 (-) False pdlim7
XM_022676290.1 mRNA upstream 650841 31880794 ~ 31943297 (-) False pdlim7
XM_022676287.1 mRNA upstream 650841 31880794 ~ 31943290 (-) False pdlim7
XM_022676277.1 mRNA upstream 650841 31880794 ~ 31943289 (-) True pdlim7
XM_022676280.1 mRNA upstream 650841 31880794 ~ 31943289 (-) False pdlim7
TU19927 other downstream 126323 31053764 ~ 31055503 (-) True G14839
trnap-agg_1 other downstream 257879 30923876 ~ 30923947 (-) False trnap-agg_1
TU19838 other downstream 258577 30914910 ~ 30923249 (-) True G14781
TU19827 other downstream 289178 30889606 ~ 30892648 (-) True LOC103045124
TU20269 other upstream 912775 32142728 ~ 32159878 (-) False nfkb1
TU20525 other upstream 1584121 32814074 ~ 32820769 (-) False hopx
TU20526 other upstream 1584121 32814074 ~ 32819171 (-) False hopx
TU20527 other upstream 1584121 32814074 ~ 32819171 (-) False hopx
TU20934 other upstream 2904639 34134592 ~ 34136732 (-) True G15497

Expression Profile