RNA id: TU19988


Basic Information

Item Value
RNA id TU19988
length 434
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G14885
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 31267660 ~ 31268093 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atcatttacatttacatttatggtatttagcagacgcccttatccagagcgacttacaacagtgcttcaaagttacttaagatatccaaagctagtttgtagactaggatcaagagatacatagagcttaatcatgttaagaaccctaggaacctttttttttattattattattattattattagtttaggaactctttgaaaagatgtgtcttcagtcgacgtttgaagacggcgagtgactctgctgttctgacatccagtggaagttcattccaccaccttggtgcagcacagagaagagtctggatgtctgttttctgtgtgttttgagtgatggaggttcgagtcgagccgtactggaagctctaagagctcttggtgcagatctggctttgaccatcgccatcaggtatgaaggtgctggtccgttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19986 lncRNA downstream 6674 31260768 ~ 31260986 (-) True G14883
TU19985 lncRNA downstream 11456 31255985 ~ 31256204 (-) True G14882
TU19980 lncRNA downstream 37707 31181826 ~ 31229953 (-) True G14877
TU19982 lncRNA downstream 53604 31212569 ~ 31214056 (-) True G14879
TU19979 lncRNA downstream 73867 31180986 ~ 31193793 (-) True G14876
TU20188 lncRNA upstream 261244 31529337 ~ 31621297 (-) True G15023
TU20202 lncRNA upstream 577089 31845182 ~ 31876961 (-) True G15037
TU20185 lncRNA upstream 609712 31877805 ~ 31879448 (-) False G15022
TU20186 lncRNA upstream 609712 31877805 ~ 31879843 (-) True G15022
TU20187 lncRNA upstream 609712 31877805 ~ 31879448 (-) False G15022
XM_022678020.1 mRNA downstream 45237 31216232 ~ 31222423 (-) True LOC107197536
XM_007245593.3 mRNA downstream 142514 31106308 ~ 31125146 (-) True LOC103034575
XM_015604857.2 mRNA downstream 189236 31058768 ~ 31078424 (-) False LOC103047264
XM_022676307.1 mRNA upstream 612701 31880794 ~ 31943297 (-) False pdlim7
XM_022676290.1 mRNA upstream 612701 31880794 ~ 31943297 (-) False pdlim7
XM_022676287.1 mRNA upstream 612701 31880794 ~ 31943290 (-) False pdlim7
XM_022676277.1 mRNA upstream 612701 31880794 ~ 31943289 (-) True pdlim7
XM_022676280.1 mRNA upstream 612701 31880794 ~ 31943289 (-) False pdlim7
TU19927 other downstream 212157 31053764 ~ 31055503 (-) True G14839
trnap-agg_1 other downstream 343713 30923876 ~ 30923947 (-) False trnap-agg_1
TU19838 other downstream 344411 30914910 ~ 30923249 (-) True G14781
TU19827 other downstream 375012 30889606 ~ 30892648 (-) True LOC103045124
TU20269 other upstream 874635 32142728 ~ 32159878 (-) False nfkb1
TU20525 other upstream 1545981 32814074 ~ 32820769 (-) False hopx
TU20526 other upstream 1545981 32814074 ~ 32819171 (-) False hopx
TU20527 other upstream 1545981 32814074 ~ 32819171 (-) False hopx
TU20934 other upstream 2866499 34134592 ~ 34136732 (-) True G15497

Expression Profile