RNA id: TU20185


Basic Information

Item Value
RNA id TU20185
length 1529
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G15022
representative False

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 31877805 ~ 31879843 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttttttgatgcttcagtgagaatctacaatataatgtaaatagtcatgaaaaaataaaggaaacgcACTGAAtaagactgtatataaagtaaaaacgGCCGCAGGACCGTGATTTACTCGCTTGCTACCTTTAGCTTTGCCCTCCAACCCCCCAGATGGAGCCCAGACCCAGTTTCCCCACCGCCTGATTCGCTGTGGCGGGGTACTTAAGGTAATGGCGAACCACTGAGGAAGAAAAAAGAGCCGCTggcagcagaacagcagtgcaTTAGCGCTGATTGCGACCATTTCATATTGACCCGACCAATGATCTTTACGTGCCTCCAATACTGAGCGCCCCACATCTATCTGCTCTAATCCGACAGGTAGCTCTAATTAAGAAAAGGCTTAAGGCCTGCGTGCGCTGAGCTGAACCGGCGCCAACACGCCGCTGCCTCGTACCTCTAATAAGACATGCAAAGAAAAGAACGAAAGAATATACGAATAAACGATGGAAGAAGAACCGGCTTTAAGAAAACCAAAGAGCACCAAAAAAAGGCTTTGCCTTTGTAGCTAACTCTCTTTAAAAGGTGTGACCTTactacaaacaaaaactaataaaaaattagaaaagaaaTTAATCAGATATATTAAAGAAtcttatatcaatatttttagaaACCACTCGAAGTGCAGGTTCTGAATCTTCTGAATTTTTTCCCCATTGGTTTCTACACAGGAAGGACAGTCACAATGATAATTATAGATTTAtcatattcaaaataaaatggACATgtcctcaataatatttgatctTGATAATGCAGATCTCctctattgtgttttatttgaacACTATTGTAGCCAATGTTTCGATAAATTCGAGTCCATACACACAGTATGaactgcagtaggtgaagacATGGGAGGTGTATctactagtgcatcccaaaaaatagagaatatcattgaaaagtaacatttttatttcagtaatttagttaaaaatgtgaaactcgtatataatataacaacagCTAAACCTGTTGTTTCCACCCTCCAGCCTGCACTCCACCTGCTGTAATAGAAACTGCTGGTTTTTAGCATGCTGTTAGCATGTAGCACCACAGTGTTCTGTTCTGAATATTAATCAGAAAATCCCTTATCAGACGCCTTTTGGTTTTACCAGACCTGTACACTCCGTAACACCAGACCTGTACACTCCGTAACTCCAGACCTGTACACTCCGTAACTCCAGACCTGTACACTCCGTAACTCCAGACCTGTACACTCCGTAACTCCAGTTCTGTTCATTCCGTAACTCAAGACCTGTACACTCCATAACACCAGACTTGTACACTCCGTAACACCGTCGGCAGTGAGCTTTAGCGAAACGGTGTtgactgtgtgtttttgtattaaaGATTTGTCTTATATTAAAGTGCCTTTTTTTTCAACAGCTTTTCAGCTCCAGACTTTATCATGATGCGTTTAAAGGAAAAACTGCTGTATTCTCTTTCACACTAGAAATGTTCTTATGCAAATTGACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20202 lncRNA downstream 844 31845182 ~ 31876961 (-) True G15037
TU20188 lncRNA downstream 256508 31529337 ~ 31621297 (-) True G15023
TU19988 lncRNA downstream 609712 31267660 ~ 31268093 (-) True G14885
TU19986 lncRNA downstream 616819 31260768 ~ 31260986 (-) True G14883
TU19985 lncRNA downstream 621601 31255985 ~ 31256204 (-) True G14882
TU20235 lncRNA upstream 115185 31994633 ~ 31995062 (-) True G15063
TU20251 lncRNA upstream 153603 32033051 ~ 32040230 (-) True G15074
TU20253 lncRNA upstream 153603 32033051 ~ 32038565 (-) False G15074
TU20256 lncRNA upstream 153603 32033051 ~ 32040230 (-) False G15074
TU20261 lncRNA upstream 162893 32042341 ~ 32045045 (-) True G15078
XM_022678020.1 mRNA downstream 655382 31216232 ~ 31222423 (-) True LOC107197536
XM_007245593.3 mRNA downstream 752659 31106308 ~ 31125146 (-) True LOC103034575
XM_015604857.2 mRNA downstream 799381 31058768 ~ 31078424 (-) False LOC103047264
XM_022676307.1 mRNA upstream 1346 31880794 ~ 31943297 (-) False pdlim7
XM_022676290.1 mRNA upstream 1346 31880794 ~ 31943297 (-) False pdlim7
XM_022676287.1 mRNA upstream 1346 31880794 ~ 31943290 (-) False pdlim7
XM_022676277.1 mRNA upstream 1346 31880794 ~ 31943289 (-) True pdlim7
XM_022676280.1 mRNA upstream 1346 31880794 ~ 31943289 (-) False pdlim7
TU19927 other downstream 822302 31053764 ~ 31055503 (-) True G14839
trnap-agg_1 other downstream 953858 30923876 ~ 30923947 (-) False trnap-agg_1
TU19838 other downstream 954556 30914910 ~ 30923249 (-) True G14781
TU19827 other downstream 985157 30889606 ~ 30892648 (-) True LOC103045124
TU20269 other upstream 263280 32142728 ~ 32159878 (-) False nfkb1
TU20525 other upstream 934626 32814074 ~ 32820769 (-) False hopx
TU20526 other upstream 934626 32814074 ~ 32819171 (-) False hopx
TU20527 other upstream 934626 32814074 ~ 32819171 (-) False hopx
TU20934 other upstream 2255144 34134592 ~ 34136732 (-) True G15497

Expression Profile