RNA id: TU20216


Basic Information

Item Value
RNA id TU20216
length 852
lncRNA type sense_over
GC content 0.47
exon number 2
gene id G15050
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 32121276 ~ 32133782 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aatatcactgtgtgtgtccttttaatattttctttactgtgttatatgtgtttttgttttcccaaaataatttgttttactATAATATTGGAATTAATCCgtgctttattattatcaatACGTGTTGGATCACTGACTTAATCTgacttaatatttatatatatatatatccattgaTCTGAAACAACttgacaagacatgacaagaaaAGACGAAAGACTGAGTGAACTTGTGCCCGGAACAGTGGGCAGCCGTTACATATATGATTTACTAatggatctaaaaaaaaaataatatcattgaaagaatatcagccaatgaaaacctgaaaatcagtgtctcagaaaattagaatattatataagaccaatcggtacttttggcagtgtgggcagtgtgccaaatcctgctggaaaatgaaatctgcatctccataaaactttagacttgataataaaacacagtgtgtgtatgtACCCCTGCTCTTTAATCCAACACTCCAATCCCAACACAGACTcccagtacattacattactgttctctcagtgtttctgccTGTTTCTCAGTGACGTCTGAGGGCTGAGGAACTCCAGCTGTGGCACCAATCAGACATATCAACCTGCTTTAAGCTCTGGACTGTTTaactgaccccaaacacacacacacacaccaaactctctctctctcaacataTTGCAGCAgcgtttatactgtatatactttatatactgtacatttacagtatacagtatatacacagcaGCACAATCCCACTGAGAAGCCTGAACCAGATGTTTGATTGCTTTGAAATgggtttcattgtttttttgtcgttttataataaaattgtTT

Function

GO: NA

KEGG:

id description
ko05131 Shigellosis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20215 lncRNA downstream 34351 32069162 ~ 32086925 (-) True G15049
TU20262 lncRNA downstream 59424 32042341 ~ 32061852 (-) False G15078
TU20261 lncRNA downstream 76231 32042341 ~ 32045045 (-) True G15078
TU20251 lncRNA downstream 81046 32033051 ~ 32040230 (-) True G15074
TU20275 lncRNA upstream 213568 32347350 ~ 32348794 (-) True G15090
TU20280 lncRNA upstream 316576 32450358 ~ 32450563 (-) True G15095
TU20460 lncRNA upstream 430580 32564362 ~ 32621435 (-) False G15206
TU20465 lncRNA upstream 431127 32564909 ~ 32621435 (-) False G15206
TU20466 lncRNA upstream 468167 32601949 ~ 32621435 (-) False G15206
XM_022676379.1 mRNA downstream 2118 32074166 ~ 32119158 (-) True dgkq
XM_007245604.3 mRNA downstream 66104 32046109 ~ 32055172 (-) True abhd18
XM_007245601.3 mRNA downstream 125764 31973592 ~ 31995512 (-) False rnf44
XM_022676341.1 mRNA downstream 130628 31973592 ~ 31990648 (-) True rnf44
XM_022676347.1 mRNA downstream 130635 31973592 ~ 31990641 (-) False rnf44
XM_007245610.3 mRNA upstream 27037 32160819 ~ 32172940 (-) False LOC103039786
XM_007245609.3 mRNA upstream 27037 32160819 ~ 32172940 (-) True LOC103039786
XM_022676418.1 mRNA upstream 488399 32622181 ~ 32638918 (-) True polr2b
XM_022676427.1 mRNA upstream 515281 32649063 ~ 32658650 (-) True rest
XM_022676449.1 mRNA upstream 600503 32734285 ~ 32750765 (-) True LOC103031569
TU19927 other downstream 1065773 31053764 ~ 31055503 (-) True G14839
trnap-agg_1 other downstream 1197329 30923876 ~ 30923947 (-) False trnap-agg_1
TU19838 other downstream 1198027 30914910 ~ 30923249 (-) True G14781
TU19827 other downstream 1228628 30889606 ~ 30892648 (-) True LOC103045124
TU20269 other upstream 8946 32142728 ~ 32159878 (-) False nfkb1
TU20525 other upstream 680292 32814074 ~ 32820769 (-) False hopx
TU20526 other upstream 680292 32814074 ~ 32819171 (-) False hopx
TU20527 other upstream 680292 32814074 ~ 32819171 (-) False hopx
TU20934 other upstream 2000810 34134592 ~ 34136732 (-) True G15497

Expression Profile