RNA id: XM_022676958.1


Basic Information

Item Value
RNA id XM_022676958.1
length 5215
RNA type mRNA
GC content 0.49
exon number 24
gene id nfkb1
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 32122222 ~ 32159963 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGGAGAAGTTGCGTTACGTCACAGGGAATTTCCAGTAAGGAAGTGAACTTTTCTTTACAAACAGATCGATCCGCGCTCGAGCGGCGACCATTAACTCGATATCGCCTCCGATCCGCCGGATAATTCACCCGCACTGCGCCCGAGCCTCTCCTCCGCACCCAGCCGAACGCCCGCCCGGCCGGAGCTCTGCGCCACCCGCGGGGCTGCATGGCTCCTTACCCGCCTGCCTGAGCTCTCTCTGCGGACTGACAGCACATGTGGAGCGGCCAGACACACCAGCACAGGAACCATGACGGAAGAGGACTCATATCTACACCCAGAGTTCTGTCTAGATTTTGCTCCAGCGTGGAGTTACCCAACAGACCCACATTTCCAGCAGCCTATTCCTCACTCCAACACACCCAGAATAGATGGACCCTGTCTCCAAATTATTGAACAACCAAAACAGCGAGGTTTCAGGTTTCGTTATGGCTGTGAAGGCCCCTCCCATGGTGGACTCCCCGGAGCCTCGAGTGAGAAGAACAGAAAGACGTACCCTCAGGTCAAGATCTGTAATTATCAAGGTCCAGCGAAGGTCGTGGTTCAGCTGGTGACCAACACCAAACTGCCCCAGCTGCACGCGCACAGCCTGGTGGGGAAGCAGTGTGAGAAGGGCGTCTGCATCGCAGACCTGCAGCCCAAAGACTCCTGCATCAGTTTTCCTAATTTAGGGATCTTGCACGTGACTAAAAAGAATGTGACTAAGACTCTGGAGGACCGGATGAGCGAGGCGTTCAGGATGGCGTATAACTGTGGAGTAGTGATCCACCCGGAAATCGACTCTCTCCAAGGAGAAACACGAATTCCCCGAGATCTCACAGAGCAGCACAGGATGCTGATCAGCACTGCAGCCAGTCACCAGGCTAAAGACATGGACCTGAGCGTGGTCAGACTGATGTTCACAGCGTTTCTGCCGGACGGCGAGGGCGGCTACACCCGCAGGCTGGACCCAGTCATATCCGAACCCATTTATGACAGCAGTGAGTGTCCCCAAGttctgtttatttcatttatatttatcacAAAAGTGATAAAATTCTCACCAAATGAATCGGTAAACGTAGAGCAGATGTCTGAGCTTAGTCTGGTTCTCCATCAGGAACACAGTCTAATGGAGGCACCATTTTCTATACATACACAAACCCTGGCGTTTTCACAGATATTCAAATTTGAgagtgtgggtcattgtttgtgtgtgtttgtggttgtaGATGATATTCAGGTGCGTTTTTACGAGGATGACGAGACGGGAATCGCCTGGGAGGCGTTTGGAGATTTCTCTCCTACAGATGTTCACCGACAGTTTGCCATCGTCTTCAAGACGCCTAAGTACCGCGACCAGAACCTGCAGAAGCCCATCTCAGTGTTCGTCCAGCTCAAGAGGAAATCCGACCACGAGACGAGCGAGCCCAAACCCTTCACTTACCACCCGCAGATCATCGATAAGGAGGAGGTTCAGAGGAAGCGGCAGAAGACCCTGCCCAACTTCCCGGACTACGGAGGTGCgggaggaggaggtgggggcATGTTTAGAGGAACCGGAGGCGGTCCTGCTACAGGGGGCGGGCAcggtggaggaggaggtggagggcaCTACTACCAGGGGTATTCTAATTTCAACAACTTTAACTCTGGCTACGGTTTTCCCCCCGCCATGGGTGGAGGCGGGACCAGCATCAAGCATGCGACTCGTGGGCCAGTGGAAGATACTGATGAGGACAGTGACAGTGACCTGGATGATGATCAGGGTTCAGCAGGAGCCGTCCAGGGCTATGTCCAGTCTGGAGCTGCTGGGGTGGATGAGGAGAGCGAGGGCTCACAAGAGCTCAGGCCTAAAGagtgtgtgtttgagcctCGGTTAGCTGAGCTGGCGGAGAGACATGCCTGCGCTCTGTTTGATTATGCTGTGACCGGTGACGCTCGCAGGCTGCTGGCTCCACAGCGCCCCCTAATGTCCACTCAGGATGAAAACGGAGACACGGGACTCCACCTGGGTGTGATCCACAGTCAGACGGATGCAGTGAAGACTCTAGCGGAGGTGATTTCAGCTATTCCAGGAGAGGATGTGCTTAACATGAGGAACGACCTGTATCAGACGCCGCTGCATCTGGCGGTGGTGACTCAGCAGAAAGAGGCGGCGGAGGTGTTACTGACGGCCAGAGCAGACGTCGCTCTCACTGATCGCAACGGAAACACAGCGCTGCATTTAGCAGCCCAgcagaaagaaggagagatggTGCGGTTACTGCTGCACCACGACAACATGCTGGAGATGACCAGCGTACCCAACACAGCAGGTCTGTGTCCGCTGCACCTGGCTGTACTGGCTAACAGTCTGAATAGCGTGAGGGCGCTGCTGGAGGGCGGGGCTAGTGTGGAGATTCAGGAGCTCACCTGTGGTCGCACGCCGCTTCACCTAGCAACCGAACGTGACAACGTGTCCCTCGCAGGATGCCTACTGCTGGAGGGGGATGCTGATGTTGACAGTGTCACATATAATGGCTCCACCCCTCTCCACATCGCAGCGGGGCGGGGCTCGCTCAAACTCAGCGCTCTGCTGGTGGTGGCAGgggCGGACCCTCATAAAGAGAACTATGAGCCACTGTTCTTCAGAGACGAGGAGTGCTGCACCACAAACGAGGAAGAGCAGGAGGATGAGGGGTATATACCAGGGACTACCCCGCTCAACATGGCTGCATCTCCTGAGgtgcgGGAAATTCTGAATGGTAAAAAGTACCAGCCCACCACCGTCTTTGTACCTCCACAAGGAGACATGCGTAGTCTGAGTGTGGAGACGAAGCGGGCGCTGTGCCAATGTCTGGAGGAGTCGGTGGGTGGGTGGGAGAGTCTGGCACACGCACTGGGACTCGGCATCCTCACCAACGCCTTCTGCCTCAGCCCCCGGCCCGCCTCCACGCTGCTGGATAGCTATGAGGTTTCGGGTGGGACGGTTCGAGAGCTCTTATCAAGTCTGAGGAGTATTGGTAACAGAGGCGCTGTCAGTATCCTGCaggaacactgtgtgtgtgaagaaaACAGCGACAACACACACCTCACCTACACACCGCCTGgtcagGTGGAGTGTGAGGAGGGGATGCGGGAGCTGAAGTTAGCTGCTCTGGATGAGGGAGGAGTTTGTGACAGTGGGGTCGAGACGTCCTTCCAGAGGCCGAGTTTCAGTCTGGCTGATTCGCTCTGAGGAGAGCTGGACCTGCGGCTTCATCCTGCCGACCTGCTGCAGTCTGACCCTTCATCTCTTCAGTTCGGACCCCAAAATACTGACCCTGATGCTCACCTTCGCCCTCACCTTCATCCTCACCTTGACGTTCAGCTCAGGAGCCCCCCTGCACCTACCCCACGTCCCTGTGGTCCCCCCGGGGCTGATACGACCCCTCTGAACCAGAATCATGATTGGCAGAGACCGCTGTGGAAGCTCTGGGGAAGCCACACCCATTATGCAGATCACAGGCGGCCGATCCTCATTGGTCGAGGAGCTCTttagttgttgttgttatttttctcaGTATATGCATTTTACGATGTCCGCTCTCGTTTGAACGTGTCCCAGTTATATGtaagacttttatttaattgttggcttgtatttttgttttttattctatgcgttttttgtttttatggtttgtatgattttttttaaaaagctaaagTTAGACTTTGGTGATTTTGATGACATCACCTGTAATGCATTTGTGATGCGTTTATCTCTCGTTATACACAGAAGATGAGGCAGGTTATGGTGTGTTTGGGTTGTGCTTTGATCattctcctaaaaaaaaataatgttctttAAGTGACAGAAAGAGCAGAAAATGTATGCAGTATTTGGgtataaaacagtagtttttgATGCACTACTGTTAATCCTGCTCTAAGACCAGGCTAATGTTACCTAGGTCTGATTAAATCAGAACCTGACATATCGTAGATACACACACTCCTTAAAAGGAaatcaagtttaaaaaaatatatattccagTATGAGCATGTCTGTTGGTCCATATATTAGGAAATATATGTACTGGTGATGGCGCAAATGAACTGAAATCAGCCATAatgtaaaactatatattaCACCCATAGGAATGGAATAATTTTAGTAGTAACTTATATTCACAGTGAATTTATACATTTAAGTATAATGTTAATGtgaacacatttatatatttagacttttttttacaataatttgAATGTAATAGGAATCTGGAAGTTGTTCCTTACATTGCATTCAAATTTGATTACAAATTAACCTAGATttgaatttgaaataaaatcttcttttattgttttttatagaTCTGTAAAGTTGCCAGAAACCTTCTTTATTTTGGAGATACGAGTAACATGCAAGTTTTTGCATGTTATTGATGATTATACACAACCTTGAACAACAACACAGCTGTGACTCGCCGTCTTCCTGTGTATAAACGAGTGATAAAGATATTTGCCTAGAAATTTGGAGTGTAATTTTGGAACATTCAGGAAtatttgatgttattttatgttatttgatgtattttttttaaaatgggtTTTAAGTGAATCCTGCCTCAGGAATTCTGCACTCCCGGACTGCGATTTGGAACACAGCCGCCCTGGTTTTGTGTCGTGCCTCGATGGccaaagctctgcatctgtagATCACTCCTGGACCTGGACGAGCTTTAGTTCTCGCAGCCTCTGGACCAGTAGCTTcgtgatttttgtatttttgagggGTGAAGGATGTGTGTGGAGCTGCACAGAGACTCTGGTGATCTTCATTTATCTTCTGGAAgcttctcgctctctctctctctctctctctctctctcgcaggtcttccctctctcgctctgcaCTGGTTTTATATGTGCAGGTTCTCTCGGTTCGTGGTGCTAAATGTTGTAATGTTATTATGAGGAAccgttgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgtgagaGAACCTGCTCCTCTACCCGAGTGTATTTCATAAGCTGTGAGAGAAACTCCATGTTTGTTAacattgtttagttttttttgtgttaacagatacacacacacacacacacacacacacacaccaatctcTCCTACCTAAAATACTGGAACATTTACTAGGACTCCTcctacagctctgcaaaaaaa

Function

GO: NA

KEGG:

id description
K02580 NFKB1; nuclear factor NF-kappa-B p105 subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20215 lncRNA downstream 35297 32069162 ~ 32086925 (-) True G15049
TU20262 lncRNA downstream 60370 32042341 ~ 32061852 (-) False G15078
TU20261 lncRNA downstream 77177 32042341 ~ 32045045 (-) True G15078
TU20251 lncRNA downstream 81992 32033051 ~ 32040230 (-) True G15074
TU20275 lncRNA upstream 187387 32347350 ~ 32348794 (-) True G15090
TU20280 lncRNA upstream 290395 32450358 ~ 32450563 (-) True G15095
TU20460 lncRNA upstream 404399 32564362 ~ 32621435 (-) False G15206
TU20465 lncRNA upstream 404946 32564909 ~ 32621435 (-) False G15206
TU20466 lncRNA upstream 441986 32601949 ~ 32621435 (-) False G15206
XM_022676379.1 mRNA downstream 3064 32074166 ~ 32119158 (-) True dgkq
XM_007245604.3 mRNA downstream 67050 32046109 ~ 32055172 (-) True abhd18
XM_007245601.3 mRNA downstream 126710 31973592 ~ 31995512 (-) False rnf44
XM_022676341.1 mRNA downstream 131574 31973592 ~ 31990648 (-) True rnf44
XM_022676347.1 mRNA downstream 131581 31973592 ~ 31990641 (-) False rnf44
XM_007245610.3 mRNA upstream 856 32160819 ~ 32172940 (-) False LOC103039786
XM_007245609.3 mRNA upstream 856 32160819 ~ 32172940 (-) True LOC103039786
XM_022676418.1 mRNA upstream 462218 32622181 ~ 32638918 (-) True polr2b
XM_022676427.1 mRNA upstream 489100 32649063 ~ 32658650 (-) True rest
XM_022676449.1 mRNA upstream 574322 32734285 ~ 32750765 (-) True LOC103031569
TU19927 other downstream 1066719 31053764 ~ 31055503 (-) True G14839
trnap-agg_1 other downstream 1198275 30923876 ~ 30923947 (-) False trnap-agg_1
TU19838 other downstream 1198973 30914910 ~ 30923249 (-) True G14781
TU19827 other downstream 1229574 30889606 ~ 30892648 (-) True LOC103045124
TU20525 other upstream 654111 32814074 ~ 32820769 (-) False hopx
TU20526 other upstream 654111 32814074 ~ 32819171 (-) False hopx
TU20527 other upstream 654111 32814074 ~ 32819171 (-) False hopx
TU20934 other upstream 1974629 34134592 ~ 34136732 (-) True G15497
TU20928 other upstream 2002160 34162123 ~ 34162958 (-) False evc2

Expression Profile