RNA id: TU20531


Basic Information

Item Value
RNA id TU20531
length 1174
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G15244
representative False

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 32784189 ~ 32794342 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGTTTATTAAGACTTTACATCAGGGCTAGATTTCAGTAATTCCACTTCCAGCATCCCCTACAATGGGAAACAGCTGAAGGAGCATTATTTGGAaatcataattataataagTGAGCTTGATCCaggagtttaaaaaataaataatttgaattTTGCATAAACAGCCTCAGGTTTTCGTTTTTGGTTGAGATACGGTAGCGGTTTTCTGTCGAACTTCACCGgcaaattaaaatgaacaacATAAATGAACTTGTGTCGAGATTACGGGAGGAATGAGGGAGATCATGAAacaataaagacaataaaactGTGTTCCCTGCACAACAGGAAGGTATTTGCATGTATTTacgcaaacaaaccaacaaaagaaCTGAATATCTCGAGTATCTGAATATCTTGAGCATCCTGATGTCTGTGTGCACACTCACCTGACTGTTTCATTCTGAATTAGAGGAAAAAACaggaattttaaataattaacagtaatTATATGTAACAGTCATGACTGTGTACAATGTATTTGATggttaaaaatgactttaacaaacaaacagaatatctctctctccctgggTCGCTTTACTGTTTATTCTACACCAGTCTCTTGGTTTTGTGTCGGTCCATTCCAAATCCATTCCAAATCCATTCCCAGTTCCCTGTCCCGGATCTCCCCTTGCATATTCTGAATAGCTGGACGTGATTGGCTGGGCGGGTCGATGTTCTTCAGCCATTCTGGATCCGTTCACCCAGATCTGCTCGGATCTCCGGAGGGCGAGTAAGGAAGGGGTTTGGGAACGGCTCTGGAACTCCACCTCTCCTCCGCCCCTCTACCATCCACTTTTCccgctcttcttcttcttgggcGGGGCTTTTTTGCGCGTAGCCCCGGAAGCTGCCGGCTTCTGTTGCCTGGGTGGGACCACGTTGGAGGCGGAGCCTGTGCCGGAGCCCGGCCGCGGGGAGGTGGGGGGGCTGCTGGCCGTCTTGCTGGCGTCTAGCTCTGCGGTGGCTCCTGAGGTCGCTCCCTGGGTTCCTCGGCCCACCTGCTCCTTCTTCTTGCCCTTCTTTCTGCCCCGGTAGTACGATCGCTCCCGCATGGGCAGCCAGCGCTCGGGGTCGGGGGTCGATTTGGGGTCGTAGTTCTTGGGTAGTTTACCTGAGAGGAAAGATGTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_455730.2 lncRNA downstream 26290 32766097 ~ 32766565 (-) True LOC103032939
TU20517 lncRNA downstream 75957 32716630 ~ 32716898 (-) True G15233
TU20462 lncRNA downstream 171420 32618227 ~ 32621435 (-) False G15206
TU20538 lncRNA upstream 1036 32795378 ~ 32795830 (-) True G15249
TU20564 lncRNA upstream 103085 32897427 ~ 32912129 (-) False G15273
TU20562 lncRNA upstream 111687 32906029 ~ 32908135 (-) True G15272
TU20563 lncRNA upstream 115039 32909381 ~ 32912129 (-) True G15273
TU20567 lncRNA upstream 117887 32912229 ~ 32913566 (-) True G15276
XM_022676449.1 mRNA downstream 42090 32734285 ~ 32750765 (-) True LOC103031569
XM_022676427.1 mRNA downstream 134205 32649063 ~ 32658650 (-) True rest
XM_022676418.1 mRNA downstream 153937 32622181 ~ 32638918 (-) True polr2b
XM_007245610.3 mRNA downstream 619915 32160819 ~ 32172940 (-) False LOC103039786
XM_022676487.1 mRNA upstream 19706 32814048 ~ 32820804 (-) True hopx
XM_022676502.1 mRNA upstream 40154 32834496 ~ 32858295 (-) False LOC103039156
XM_022676496.1 mRNA upstream 40154 32834496 ~ 32858295 (-) True LOC103039156
XM_007260318.3 mRNA upstream 66341 32860683 ~ 32865337 (-) True LOC103029668
XM_022676517.1 mRNA upstream 126683 32921025 ~ 32943593 (-) True LOC103029347
TU20269 other downstream 632977 32142728 ~ 32159878 (-) False nfkb1
TU19927 other downstream 1737352 31053764 ~ 31055503 (-) True G14839
trnap-agg_1 other downstream 1868908 30923876 ~ 30923947 (-) False trnap-agg_1
TU19838 other downstream 1869606 30914910 ~ 30923249 (-) True G14781
TU19828 other downstream 1900207 30889606 ~ 30892648 (-) False LOC103045124
TU20525 other upstream 19732 32814074 ~ 32820769 (-) False hopx
TU20526 other upstream 19732 32814074 ~ 32819171 (-) False hopx
TU20527 other upstream 19732 32814074 ~ 32819171 (-) False hopx
TU20934 other upstream 1340250 34134592 ~ 34136732 (-) True G15497
TU20928 other upstream 1367781 34162123 ~ 34162958 (-) False evc2

Expression Profile