RNA id: TU20538



Basic Information


Item Value
RNA id TU20538
length 432
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G15249
representative True

Chromosome Information


Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 32795378 ~ 32795830 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


TAAGTGAGGAGGTTATATagtgtgtaaattaaatataactGTAAGAGGTGGGgttatatagtgtgtgtttgagttagTATTGAGTTAGTCGGTTGTCAGGGTGTTGGGTTACCGGTTGTAGAGGGGGGGTAACAGACCTGAGCCGGTACCGGAGCCGCCCGGGCGGTTCGGGTCCGGGTCTCGGTGTTCGGTAGTCGCGGTTTTTCCCGCGGTTTCTCGGGTTTTCTGGTTTGTAAGAAGCTCCAGAGTATAAACAGTAACCCCCCCGCCAGCGCGAGCGCAGCACCCACCGCGCTCGCCTCCCGCACACCCGCCATCCCCGCTCTGCTCCCCGCAAAGCCGCGGATTCGGATCTAAACCGGGTTAATTCGGATCTACTCCGGTTTACTCTGGTTTATTCCACGAGTCTCAGCAGCCCGCCGCCATaccgga

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU20532 lncRNA downstream 1036 32784189 ~ 32794342 (-) True G15244
TU20531 lncRNA downstream 1036 32792855 ~ 32794342 (-) False G15244
XR_455730.2 lncRNA downstream 28813 32766097 ~ 32766565 (-) True LOC103032939
TU20517 lncRNA downstream 78480 32716630 ~ 32716898 (-) True G15233
TU20462 lncRNA downstream 173943 32618227 ~ 32621435 (-) False G15206
TU20564 lncRNA upstream 101597 32897427 ~ 32912129 (-) False G15273
TU20562 lncRNA upstream 110199 32906029 ~ 32908135 (-) True G15272
TU20563 lncRNA upstream 113551 32909381 ~ 32912129 (-) True G15273
TU20567 lncRNA upstream 116399 32912229 ~ 32913566 (-) True G15276
TU20586 lncRNA upstream 175707 32971537 ~ 32973457 (-) True G15289
XM_022676449.1 mRNA downstream 44613 32734285 ~ 32750765 (-) True LOC103031569
XM_022676427.1 mRNA downstream 136728 32649063 ~ 32658650 (-) True rest
XM_022676418.1 mRNA downstream 156460 32622181 ~ 32638918 (-) True polr2b
XM_007245610.3 mRNA downstream 622438 32160819 ~ 32172940 (-) False LOC103039786
XM_022676487.1 mRNA upstream 18218 32814048 ~ 32820804 (-) True hopx
XM_022676502.1 mRNA upstream 38666 32834496 ~ 32858295 (-) False LOC103039156
XM_022676496.1 mRNA upstream 38666 32834496 ~ 32858295 (-) True LOC103039156
XM_007260318.3 mRNA upstream 64853 32860683 ~ 32865337 (-) True LOC103029668
XM_022676517.1 mRNA upstream 125195 32921025 ~ 32943593 (-) True LOC103029347
TU20269 other downstream 635500 32142728 ~ 32159878 (-) False nfkb1
TU19927 other downstream 1739875 31053764 ~ 31055503 (-) True G14839
trnap-agg_1 other downstream 1871431 30923876 ~ 30923947 (-) False trnap-agg_1
TU19838 other downstream 1872129 30914910 ~ 30923249 (-) True G14781
TU19828 other downstream 1902730 30889606 ~ 30892648 (-) False LOC103045124
TU20525 other upstream 18244 32814074 ~ 32820769 (-) False hopx
TU20526 other upstream 18244 32814074 ~ 32819171 (-) False hopx
TU20527 other upstream 18244 32814074 ~ 32819171 (-) False hopx
TU20934 other upstream 1338762 34134592 ~ 34136732 (-) True G15497
TU20928 other upstream 1366293 34162123 ~ 34162958 (-) False evc2

Expression Profile