RNA id: TU20567


Basic Information

Item Value
RNA id TU20567
length 1236
lncRNA type inter_gene
GC content 0.31
exon number 2
gene id G15276
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 32912229 ~ 32913566 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aatattttaatattaattgagccaaacacaatatttatgcagaaatatattaattttaactacttttgGATTGTCAATTTGATATTTGGGAActttgctgcagtttttcatACAATGGAGAAATAACAGAAGGGATTAATTATCAGTGTAGTGAATCTATAGTGAGTGTATAGTGAATATATAGTGAATGGGAACAGATGGTACGGTATATAAAATATtgccaaacacacaaaaacacatagaGCACAGAGTAATAAAATCATAATCAGAGTAAAGGTTGAAAGGaaatcctatatatatatacgctaAATGGTCTCGTTATACGTCTATAAACTCGCTGTAAGCTCTAAAAAACTGTGTTCAGTCccataatttcattattttagtaattaatacaaaaaacagtAGAACTCGCTGTAATCAGAACGCTCGTAAAGCTACAGGGTGATTAAAATATGTACaagattacaaaaaataaaacgtgatctttatatttatatataatctatACGCATACATACGTGAGTCTGTActcggtacagtttaaaagtccATCAGATCTGTGGAAACTTAATCAATTTCATTAATCGCTAATCAAtaaacttcttaataaaaaCTAGAAGTGAACAGTGGagattttctatttctattatttctatcggcccttttttaaaaacaggcaCAACTGTGGAATTTACTGGAAGAACTGCCGAACTTCACTGATCAATACGATCTATTGATTATTAACTTTCGAGTGACACATATTATTACACATGAATTAATTACTGAACTGTTTTTAACAAAGTATCAATGAGAAAACAATAATGAAATATGCTAAGTTGCTAAATGCTAACAAtaaatgaaccaaaaaaaattagCACTAGCActagtgttagcattagcattagcaatacGCAAACTGCATGATGCTGATTGGTGGATGCCGAGTTGCACTTATTGTTAGAGACACATTATGTAACATGATCAGTCAActttaacaacaacaataatctCTGATAATGTAAaagatcaaaaacaaaaaagagataaaaggaAAATATTCTACAAATTAACATCTATAACAGTAATTAGTAAAGTCTTCAGCTATTGGccgatatataaaaatatgcgCATTCCATCGTGAAGCTCGGATTGGactgaaagaagaagaagaagaagaagaagaaaaagcagaagaagtggaagaagaagaaaaaacagaagaagaagaagaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20564 lncRNA downstream 100 32897427 ~ 32912129 (-) False G15273
TU20563 lncRNA downstream 100 32909381 ~ 32912129 (-) True G15273
TU20562 lncRNA downstream 4094 32906029 ~ 32908135 (-) True G15272
TU20538 lncRNA downstream 116399 32795378 ~ 32795830 (-) True G15249
TU20532 lncRNA downstream 117887 32784189 ~ 32794342 (-) True G15244
TU20586 lncRNA upstream 57971 32971537 ~ 32973457 (-) True G15289
TU20587 lncRNA upstream 68924 32982490 ~ 32983360 (-) False G15289
TU20615 lncRNA upstream 99804 33013370 ~ 33023936 (-) True G15300
TU20618 lncRNA upstream 102699 33016265 ~ 33018552 (-) True G15302
TU20620 lncRNA upstream 105546 33019112 ~ 33019563 (-) False G15303
XM_007260318.3 mRNA downstream 46892 32860683 ~ 32865337 (-) True LOC103029668
XM_022676502.1 mRNA downstream 53934 32834496 ~ 32858295 (-) False LOC103039156
XM_022676496.1 mRNA downstream 53934 32834496 ~ 32858295 (-) True LOC103039156
XM_022676487.1 mRNA downstream 91425 32814048 ~ 32820804 (-) True hopx
XM_022676449.1 mRNA downstream 161464 32734285 ~ 32750765 (-) True LOC103031569
XM_022676517.1 mRNA upstream 7459 32921025 ~ 32943593 (-) True LOC103029347
XM_007260314.2 mRNA upstream 42565 32956131 ~ 32959840 (-) True LOC103028197
XM_022676559.1 mRNA upstream 122283 33035849 ~ 33073381 (-) True LOC103027351
XM_022676596.1 mRNA upstream 161567 33075133 ~ 33084176 (-) False kiaa0141
XM_022676592.1 mRNA upstream 161567 33075133 ~ 33084176 (-) True kiaa0141
TU20525 other downstream 91460 32814074 ~ 32820769 (-) False hopx
TU20526 other downstream 93058 32814074 ~ 32819171 (-) False hopx
TU20527 other downstream 93058 32814074 ~ 32819171 (-) False hopx
TU20269 other downstream 752351 32142728 ~ 32159878 (-) False nfkb1
TU19927 other downstream 1856726 31053764 ~ 31055503 (-) True G14839
TU20934 other upstream 1221026 34134592 ~ 34136732 (-) True G15497
TU20928 other upstream 1248557 34162123 ~ 34162958 (-) False evc2
TU20930 other upstream 1248557 34162123 ~ 34162958 (-) False evc2
TU20938 other upstream 1327760 34241326 ~ 34242318 (-) True G15498

Expression Profile