RNA id: TU20587


Basic Information

Item Value
RNA id TU20587
length 670
lncRNA type inter_gene
GC content 0.31
exon number 2
gene id G15289
representative False

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 32971537 ~ 32983360 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TAATAGCTTTATTTACAGATGAACTcgcttgcttttgtttttctgtttttattccgCAGGCGccgcttcttcttcttttgttcgGTGGGAATCCGTGATTCTCTCgactctcttcttttttttgtttgtctttttaaagtaatttccaGTCTTGATCGGTTGAGAATGCTACCTGtgaggagtggtgtgtgtgtgtgtgtgtgtgtgtttatctgactgactgaccacgatggtaaaaaaaaaaaaaaaagaaaggaaaaaaaaaaaagagcttccAAATCAAAAAGGTttgagtgcaaaaaaaaaaaaagtgggcaGAGTTTGACCAGAATCATGTGATCAGTCTGAGGAGGTGAGGATGAGTGGGTGGAGGAGTAGATAGATGAATGTGTAGAcagaagaacaaaagaaaggcACGTTACTTTAAAAGGAAAGGGTGaatcaagaaagaaagaaaaaaagaaataaaagagagagagagagtggctctgttcacacctggcattaccATTTGCATCCTGGGTGATCTGATCAATTGGCTAGCCATTGATTTTATTGCATCTCCTGTGAGGCTTGTAACTGGATTtctgatcacaagccatcaaaccaccaaactgaactgcttaaatttttgcaccaggagtaaagcagcataaagttatccaaaagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20586 lncRNA downstream 9033 32971537 ~ 32973457 (-) True G15289
TU20567 lncRNA downstream 68924 32912229 ~ 32913566 (-) True G15276
TU20564 lncRNA downstream 70361 32897427 ~ 32912129 (-) False G15273
TU20563 lncRNA downstream 70361 32909381 ~ 32912129 (-) True G15273
TU20562 lncRNA downstream 74355 32906029 ~ 32908135 (-) True G15272
TU20615 lncRNA upstream 30010 33013370 ~ 33023936 (-) True G15300
TU20618 lncRNA upstream 32905 33016265 ~ 33018552 (-) True G15302
TU20620 lncRNA upstream 35752 33019112 ~ 33019563 (-) False G15303
TU20621 lncRNA upstream 36017 33019377 ~ 33040395 (-) True G15303
TU20593 lncRNA upstream 49810 33033170 ~ 33066563 (-) True G15290
XM_007260314.2 mRNA downstream 22650 32956131 ~ 32959840 (-) True LOC103028197
XM_022676517.1 mRNA downstream 38897 32921025 ~ 32943593 (-) True LOC103029347
XM_007260318.3 mRNA downstream 117153 32860683 ~ 32865337 (-) True LOC103029668
XM_022676502.1 mRNA downstream 124195 32834496 ~ 32858295 (-) False LOC103039156
XM_022676559.1 mRNA upstream 52489 33035849 ~ 33073381 (-) True LOC103027351
XM_022676596.1 mRNA upstream 91773 33075133 ~ 33084176 (-) False kiaa0141
XM_022676592.1 mRNA upstream 91773 33075133 ~ 33084176 (-) True kiaa0141
XM_007260311.3 mRNA upstream 109505 33092865 ~ 33101606 (-) True nudt6
XM_007260309.3 mRNA upstream 317873 33301233 ~ 33348173 (-) True ankrd50
TU20525 other downstream 161721 32814074 ~ 32820769 (-) False hopx
TU20526 other downstream 163319 32814074 ~ 32819171 (-) False hopx
TU20527 other downstream 163319 32814074 ~ 32819171 (-) False hopx
TU20269 other downstream 822612 32142728 ~ 32159878 (-) False nfkb1
TU19927 other downstream 1926987 31053764 ~ 31055503 (-) True G14839
TU20934 other upstream 1151232 34134592 ~ 34136732 (-) True G15497
TU20928 other upstream 1178763 34162123 ~ 34162958 (-) False evc2
TU20930 other upstream 1178763 34162123 ~ 34162958 (-) False evc2
TU20938 other upstream 1257966 34241326 ~ 34242318 (-) True G15498

Expression Profile