RNA id: TU20930


Basic Information

Item Value
RNA id TU20930
length 455
RNA type TUCP
GC content 0.67
exon number 3
gene id evc2
representative False

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 34151823 ~ 34172017 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGCCCATGGAGAGGCTACGTGAGCGGGGCCGGGACACTGCGGTCGCTCTGTGGGCGGCTCGGAGCTCCGCCCACCAGCGCAGAGAGGAGGAGCTGCAGCGGCAGAAGCACGTGCGACTCCGGCTGGACCGGTACTACAGGAGTGTGTTGGAGAGTCAGTGGGCGCTGTCGGAGGCGGAGCTTCTGCGGGTGAGGCTGGCGTGGGTCAAATGTGTATGTCAGGTAGATCGGTGTCTGGCACTCTCGCacgctctcgctctcgctcgACTGCACACCACACTGACCGACCACCCGGACCCTCGCACGGACCACCCGGATACTCACACGGACCACCCGGGCCCTCGCACGGACCACCCGGGCCCTCGCACGGACCACCCGGACCCTCGCACACAGAAGGTGGTAGTGAATACAGAGCGCCCCCTGGAGGCTTCACGGAGTGGCCACTGCAGAACTGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20950 lncRNA downstream 3961 34157327 ~ 34158162 (-) True G15509
XR_002650849.1 lncRNA downstream 25434 34134586 ~ 34136689 (-) True LOC111194046
TU20916 lncRNA downstream 119764 34041722 ~ 34042359 (-) True G15486
TU20871 lncRNA downstream 238115 33923606 ~ 33924008 (-) True G15454
TU20866 lncRNA downstream 274035 33883746 ~ 33888088 (-) True G15451
TU20951 lncRNA upstream 4584 34167542 ~ 34167902 (-) True G15510
TU20953 lncRNA upstream 11242 34174200 ~ 34175378 (-) False G15512
TU20954 lncRNA upstream 11242 34174200 ~ 34175378 (-) True G15512
TU20956 lncRNA upstream 11242 34174200 ~ 34175378 (-) False G15512
TU20958 lncRNA upstream 14243 34177201 ~ 34178567 (-) False G15513
XM_022676762.1 mRNA downstream 25551 34134586 ~ 34136572 (-) True cytl1
XM_007240688.3 mRNA downstream 58749 34090634 ~ 34103374 (-) True stx18
XM_022676715.1 mRNA downstream 83834 34071903 ~ 34078289 (-) True lyar
XM_022676718.1 mRNA downstream 83842 34071903 ~ 34078281 (-) False lyar
XM_007240686.2 mRNA downstream 97075 34057798 ~ 34065048 (-) True tmem128
XM_022676826.1 mRNA upstream 22670 34185628 ~ 34190394 (-) False LOC103038859
XM_022676821.1 mRNA upstream 22670 34185628 ~ 34190394 (-) True LOC103038859
XM_022676832.1 mRNA upstream 22670 34185628 ~ 34189387 (-) False LOC103038859
XM_022676839.1 mRNA upstream 22670 34185628 ~ 34188780 (-) False LOC103038859
XM_022676864.1 mRNA upstream 28189 34191147 ~ 34198885 (-) True crmp1
TU20934 other downstream 25391 34134592 ~ 34136732 (-) True G15497
TU20525 other downstream 1341354 32814074 ~ 32820769 (-) False hopx
TU20526 other downstream 1342952 32814074 ~ 32819171 (-) False hopx
TU20527 other downstream 1342952 32814074 ~ 32819171 (-) False hopx
TU20269 other downstream 2002245 32142728 ~ 32159878 (-) False nfkb1
TU20938 other upstream 78368 34241326 ~ 34242318 (-) True G15498

Expression Profile