RNA id: TU20934


Basic Information

Item Value
RNA id TU20934
length 1627
RNA type TUCP
GC content 0.43
exon number 3
gene id G15497
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 34134592 ~ 34136732 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cacacacacacgcacacaaacacacacacacacacacacacacacacacaacacacacacaccacacacacacacacacaacacacacacacacacatatatataaataaagacacAAGCTACAGATAAAACATGCAGTGGAGTTTTCTCTTTACTGCAGGTGAGCGGATGGTTCTGATGTTCTGGTTTTTCTCCTCCACAGAAAGAGTGCGCTCAGGTTTTACCCAAGATGTTCCTGGACATACATAATTCCTGCATCACCGCTAAACTGCGGGACTTCCTGTACGTGGTGGAGAACCTGCCGGTGGAGGCCTGCCGAGAACGTCCGCGATTCGTCAACCTGAAGCGCAAAGTCCAAAAACTGTACTTCATCATCAGCCAAGCGTGCTACCGGgatctGGTGTATTTAACGGATGACTGTGAGGCTCTGGATACAGGATACAGCCGCCCACGATACACCGAGGACAGACTGCAGCTACTGGAGGAGACCAGctgagatacacacacacacacacacacacaatacacaaacacacacacacacacacacacacacacacacacatatatataaataaagacacAAGCTACAGATAAAACATGCAGTGGAGTTTTCTCTTTACTGCAGGTTTtgctggtttgtgtttttttatctacCTTTTctccactatctctctctctctctctctctctctctctctctctctctctgtgatgaATTCCTTCTTTTTTCAGGCTAATGTTGATGATGATTCACTTCCTCTGAGAGCTTCTTTAACCGCATGTTGTTGGTTCACAGCAACCGATTCCAAATATAATCTCCACCCCTAAAACCAGCTGCAGATCTTTTACCTCCTTAACTGAAGATGAATTAATAAAGAAGCTAAAATAGCTTTTCGCTTAAtctgaaaaatagaaaaatggttgtaatttctaaaaagttcatttgatattttgttaaaccccttgaattaaacctgaaagtctgaagttaaattatattttattttatattaattttaaatccaATATCCAGTACTCGCAGAATAcggtgtgtttttgttttaaactgaaaacatgcgcacacacacacaccacacaaacacacgcctGTTTCAgatgacgtgtgtgtgtgtgtgtgtctgcattcCAGCAGTGGAGGAAAACTTTCCACAGGAAATGAGGGAATGCGAGCGGCCCCCCAATCGCCCACAGCCCCCCCTATTATCATTATCCACAccagggggaggggcttcaGGTTACATGTAAACATCATCAGCTGATGTGGTTAATTTGGGAGGGACTAAATTACATCAATCAGAACCTAATAAATATACCTGGATTCTGAAGTCCAGTACAGAACCGGTTCCCACAGTATCAGTGCTGACGGGTCGAGCGAGCAGCAcactgaactctctctctcctgcagctCAGATCCGGCTCTACAGGACCAGAATAATTCACttctgctcaacatcaccattCTGTTTCTACATTACAGTTATCAGTTATTAGAGGATCTGCTTTCATTCCATCCCAACCTAATAAagacctgtatatatatatattactccTCTCTCTGCTGACTGTTTATCTGTTCATCCTGATGTAGCAGATCTATAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20916 lncRNA downstream 92233 34041722 ~ 34042359 (-) True G15486
TU20871 lncRNA downstream 210584 33923606 ~ 33924008 (-) True G15454
TU20869 lncRNA downstream 243489 33833697 ~ 33891103 (-) True G15452
TU20862 lncRNA downstream 243762 33812017 ~ 33890830 (-) True G15449
TU20866 lncRNA downstream 246504 33883746 ~ 33888088 (-) True G15451
TU20950 lncRNA upstream 20595 34157327 ~ 34158162 (-) True G15509
TU20951 lncRNA upstream 30810 34167542 ~ 34167902 (-) True G15510
TU20953 lncRNA upstream 37468 34174200 ~ 34175378 (-) False G15512
TU20954 lncRNA upstream 37468 34174200 ~ 34175378 (-) True G15512
TU20956 lncRNA upstream 37468 34174200 ~ 34175378 (-) False G15512
XM_007240688.3 mRNA downstream 31218 34090634 ~ 34103374 (-) True stx18
XM_022676715.1 mRNA downstream 56303 34071903 ~ 34078289 (-) True lyar
XM_022676718.1 mRNA downstream 56311 34071903 ~ 34078281 (-) False lyar
XM_007240686.2 mRNA downstream 69544 34057798 ~ 34065048 (-) True tmem128
XM_007240685.3 mRNA downstream 79020 34044511 ~ 34055572 (-) True otop1
XM_022676967.1 mRNA upstream 15091 34151823 ~ 34172017 (-) True evc2
XM_022676826.1 mRNA upstream 48896 34185628 ~ 34190394 (-) False LOC103038859
XM_022676821.1 mRNA upstream 48896 34185628 ~ 34190394 (-) True LOC103038859
XM_022676832.1 mRNA upstream 48896 34185628 ~ 34189387 (-) False LOC103038859
XM_022676839.1 mRNA upstream 48896 34185628 ~ 34188780 (-) False LOC103038859
TU20525 other downstream 1313823 32814074 ~ 32820769 (-) False hopx
TU20526 other downstream 1315421 32814074 ~ 32819171 (-) False hopx
TU20527 other downstream 1315421 32814074 ~ 32819171 (-) False hopx
TU20269 other downstream 1974714 32142728 ~ 32159878 (-) False nfkb1
TU19927 other downstream 3079089 31053764 ~ 31055503 (-) True G14839
TU20928 other upstream 25391 34162123 ~ 34162958 (-) False evc2
TU20930 other upstream 25391 34162123 ~ 34162958 (-) False evc2
TU20938 other upstream 104594 34241326 ~ 34242318 (-) True G15498

Expression Profile