RNA id: TU20940


Basic Information

Item Value
RNA id TU20940
length 281
lncRNA type read_through
GC content 0.51
exon number 2
gene id G15499
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 34203530 ~ 34243927 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgtgtgtgtgtgtgtgtgagtgcgtgtgtgagtgtgtgagtgtgtgtgtgtgttagtgtgtgtgtgagtgtgtgtgtgagactcaCTGGTGCAGGGTGAGGAGGGGTTTGCGGATGAGCTGCAGGTTGATACCAAAACTCATAGCAAGTCTCTTTGCCAGATTTCTAATATCCCTCATCTCCTCAGCCTGGTCCTCCTCTCCTAATGACGAAAacatctacacacacacacacacacacacacacacgcacacacacacgcacacacacacgcacacacac

Function

GO: NA

KEGG:

id description
ko04145 Phagosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20963 lncRNA downstream 8302 34194775 ~ 34195228 (-) True G15516
TU20958 lncRNA downstream 24963 34177201 ~ 34178567 (-) False G15513
TU20959 lncRNA downstream 25236 34177201 ~ 34178294 (-) True G15513
TU20954 lncRNA downstream 28152 34174200 ~ 34175378 (-) True G15512
XM_022676864.1 mRNA downstream 4645 34191147 ~ 34198885 (-) True crmp1
XM_022676826.1 mRNA downstream 13136 34185628 ~ 34190394 (-) False LOC103038859
TU20928 other downstream 40572 34162123 ~ 34162958 (-) False evc2
TU20930 other downstream 40572 34162123 ~ 34162958 (-) False evc2
TU20934 other downstream 66798 34134592 ~ 34136732 (-) True G15497
TU20526 other downstream 1384359 32814074 ~ 32819171 (-) False hopx

Expression Profile