RNA id: TU9540


Basic Information

Item Value
RNA id TU9540
length 993
RNA type TUCP
GC content 0.31
exon number 3
gene id G6995
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 700764 ~ 702320 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cacttaaggATAACCAGGGTAAGACCCAGAAAATAACAACCAACCCTCGGATCAGAGTATTTTTCTTGAAAATTTATTAGACAACAGAAACCACATTTCCCATCTTCTCTTAGTTAGCACTTAGAATCACGCTACCCTGTGATTTCCATAGGAAAGTAATTCATTATAAAAATCACACACCGAAAGGTTCACACACTGGGTCCTGATTTTAACACGGCACACTGCAAAGCTGAATCACACAAAAAGACAGTGATCACACTACAACCCCACACAAAATAACACCCTCCTAGAGGGTAATCTTACAGGGGTGATCCAGGCTCAGCTAAGAGAACTAATGGACAAGGATTAAcacactgaaacaaacaaacaaaaggaaaataaacaaaaaaaagaaaaataaataagccaGCTGTCCACACGATCCCGTCCAGTGACCCACTGACAAGCTGGCTTATTACAGATAACCATTACACCCCATGAGCAGCCTCAGACCATACCAGAGAATTACAGCtaaaaaactttactttattaagATCACTTTAAAATCACTAAAGAACAGCAACTGGCAGTTAATGGCGCTCCGAGCACATCTACaaagaacaaataaacaaaccattACAGCACAACCTTAGCATACAATAAACCCCAAAAGAACTTATAAATAAGGTCACAGAAATTACATACCATTAATCCCACTGCACTGCTAACAATCCCCGCACCCATTATCAGTTACATGCAGTCACCGGACACCAACCGCCGTCCCCACTGTATACTGCCGTCACACATGCCGGCCATCCAGCGCGAGTACTTCTTCTCTCACCCCAAACACACTCACAGCGTTGCCATCCGCAATCCCATGTGTTTCTACCGCTGCTTTCGAGAGGACCCCGGCTCTGCTTCGGAAGGACCCACAGCTGCCCCTTTTAACGCCAGCCCAAATTACAACTCCAGTGAGCATGCGCAAACGTTCCTTCACTGGTCACCCGGGCTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9466 lncRNA upstream 101714 598561 ~ 599050 (+) True G6939
TU9450 lncRNA upstream 124408 544622 ~ 576356 (+) True G6929
TU9449 lncRNA upstream 126140 544434 ~ 574624 (+) True G6928
TU9411 lncRNA upstream 277246 413131 ~ 423518 (+) True G6901
TU9405 lncRNA upstream 319824 380604 ~ 380940 (+) True G6895
TU9617 lncRNA downstream 332752 1035072 ~ 1035957 (+) True LOC111194143
XR_002650948.1 lncRNA downstream 332834 1035154 ~ 1035957 (+) False LOC111194143
TU9620 lncRNA downstream 334957 1037277 ~ 1037489 (+) True G7057
XR_002650951.1 lncRNA downstream 336060 1038380 ~ 1040771 (+) False LOC111194145
XR_002650952.1 lncRNA downstream 336060 1038380 ~ 1040771 (+) False LOC111194145
XM_022671653.1 mRNA upstream 129186 554179 ~ 571578 (+) False gtpbp1
XM_022671660.1 mRNA upstream 129186 554179 ~ 571578 (+) True gtpbp1
XM_022671656.1 mRNA upstream 129186 554179 ~ 571578 (+) False gtpbp1
XM_022671650.1 mRNA upstream 151022 540319 ~ 549742 (+) True LOC111193015
XM_022671645.1 mRNA upstream 172764 514280 ~ 528000 (+) True LOC111193013
XM_015602574.2 mRNA downstream 373662 1075982 ~ 1103227 (+) False LOC103025552
XM_007237779.2 mRNA downstream 375249 1077569 ~ 1103227 (+) False LOC103025552
XM_022671704.1 mRNA downstream 375430 1077750 ~ 1103227 (+) True LOC103025552
XM_007237778.3 mRNA downstream 376944 1079264 ~ 1103227 (+) False LOC103025552
XM_007237780.3 mRNA downstream 415181 1117501 ~ 1119058 (+) True ier2
trnal-uaa other upstream 162867 537815 ~ 537897 (+) True trnal-uaa
trnal-caa other upstream 167552 533130 ~ 533212 (+) True trnal-caa
trnal-uag other upstream 167911 532771 ~ 532853 (+) True trnal-uag
TU9412 other upstream 263376 413131 ~ 437388 (+) False G6901
TU9686 other downstream 637886 1340206 ~ 1345431 (+) True G7109
TU9779 other downstream 1347999 2050319 ~ 2058823 (+) False carm1
TU9947 other downstream 1828296 2530616 ~ 2533763 (+) False G7296
TU10347 other downstream 2746901 3449221 ~ 3452666 (+) True G7593
TU10606 other downstream 3221965 3924285 ~ 3929003 (+) False natd1

Expression Profile