RNA id: TU9779


Basic Information

Item Value
RNA id TU9779
length 393
RNA type TUCP
GC content 0.64
exon number 2
gene id carm1
representative False

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 2050283 ~ 2080541 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CAGAGCGGTTGCGTgttcgctgctgctgctgctgctctcttcCCCCCCCAAGCTTGAAGATGGCGGTGTCGGTGTTCCCCGGCGTGCGGCTCCTCTCCATTGGGGACGCGAACGGAGATATCCAGCGGCACTCGGAGCAGCAGCCTCTGCGCCTGGAGGTGAAAACTACGCAGGACGCGGCCCTGATCAACCTCTCCAACAATGAAGAAGCGAGTGTGTTTAAGTGTTCTGTGTCGCGGGAGACGGAGTGCAGCCGTGTTGGAAAACAGTCCTTCATCATCACACTCGGCTGTAACAGCGTGCTCCTGCAGTTCTCCTCCCCCACAGGTAACACTCAACCTCctggcccacacacacacaccacacacacacacacacaccacacacacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9776 lncRNA upstream 2756 2039423 ~ 2047563 (+) False LOC103037883
TU9681 lncRNA upstream 700833 1337239 ~ 1349486 (+) True G7106
TU9685 lncRNA upstream 710780 1338922 ~ 1339539 (+) True G7108
XR_002650951.1 lncRNA upstream 1009548 1038380 ~ 1040771 (+) False LOC111194145
XR_002650952.1 lncRNA upstream 1009548 1038380 ~ 1040771 (+) False LOC111194145
TU9807 lncRNA downstream 68153 2126976 ~ 2128296 (+) True G7201
TU9818 lncRNA downstream 88594 2147417 ~ 2148305 (+) True G7205
TU9841 lncRNA downstream 148608 2207431 ~ 2207730 (+) True G7219
TU9940 lncRNA downstream 331393 2390216 ~ 2398641 (+) True G7292
TU9941 lncRNA downstream 331393 2390216 ~ 2396048 (+) False G7292
XM_007237896.3 mRNA upstream 2756 2039387 ~ 2047563 (+) False LOC103037883
XM_007237895.3 mRNA upstream 2756 2039388 ~ 2047563 (+) True LOC103037883
XM_022671786.1 mRNA upstream 19778 2018761 ~ 2030541 (+) True LOC103038420
XM_022671795.1 mRNA upstream 19778 2024367 ~ 2030541 (+) False LOC103038420
XM_007239177.2 mRNA upstream 715285 1329242 ~ 1335034 (+) True alkbh7
XM_022671837.1 mRNA downstream 42887 2101710 ~ 2104856 (+) True timm29
XM_022671892.1 mRNA downstream 94509 2153332 ~ 2160858 (+) False LOC103036529
XM_022671889.1 mRNA downstream 94515 2153338 ~ 2160858 (+) False LOC103036529
XM_022671886.1 mRNA downstream 94520 2153343 ~ 2160858 (+) True LOC103036529
XM_022671864.1 mRNA downstream 101992 2160815 ~ 2204579 (+) False LOC103039361
TU9686 other upstream 704888 1340206 ~ 1345431 (+) True G7109
TU9540 other upstream 1347999 700764 ~ 702320 (+) True G6995
trnal-uaa other upstream 1512422 537815 ~ 537897 (+) True trnal-uaa
trnal-caa other upstream 1517107 533130 ~ 533212 (+) True trnal-caa
trnal-uag other upstream 1517466 532771 ~ 532853 (+) True trnal-uag
TU9947 other downstream 471793 2530616 ~ 2533763 (+) False G7296
TU10347 other downstream 1390398 3449221 ~ 3452666 (+) True G7593
TU10606 other downstream 1865462 3924285 ~ 3929003 (+) False natd1
TU10605 other downstream 1865565 3924388 ~ 3929003 (+) False natd1
trnac-gca_1 other downstream 2087813 4146636 ~ 4146707 (+) True trnac-gca_1

Expression Profile