RNA id: XM_007229943.2


Basic Information

Item Value
RNA id XM_007229943.2
length 6160
RNA type mRNA
GC content 0.49
exon number 11
gene id gpatch8
representative False

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 7964173 ~ 8020034 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gagacggagaggaGCGGAGAGAAAATGGCTGACAGGTTTTCTAGATTCAACGAGGAACGTGATTTCCAGGGCGGAAATCACTTCGACCAGTATGAGGAGGGCCAGTTGGAGTTGGAACAGGCCTCTTTGGACAAGCCAATAGAATCGCGAATTGGCCCCAATTAGCTAAGCAGCTCTGACCCGGCCAGGGTTTAAAAGCCAGGATAACATTGGCCATCGACTACTTCAGAAACATGGCTGGAAGCTGGGACAAGGCCTTGGCAAAACCATGCAGGCGTTATGATCCTGGCCATGTTGTGCTGATGGTAAACTTAGTGGACGCACCGACCCTGTGCCCATCATCCTCAAATATGACGTCATGGGAATGGGACGCATGGAGATGGAGCTGGACTATGCAGAAGATGCTACAGAGAAGCGGCGAGTGTTGGAAGTGGAGAAGGAAGATACAGAGGAGTTGCGACAGAAGTACAAGGATtttgcagaaaaggagaaagccATTGCCAAGGCGTTGGAAGACCTGAGAGCCAACTTCTACTGTGAGCTCTGTGATAAGCAGTATCAGAAACACCAGGAGTTTGACAATCACATCAACTCCTACGACCACGCACATAAACAGAGGCTGAAGGAGCTAAAGCAGAGGGAATTTGCACGGAATGTGTCTTCACGATCCCGTAAGGATGGGAAGAAGCAAGAGAAGATGCTGAGGCGTCTACACGAACTAGCAGAGCAGAGGAAACAGCAAGACTGtgttcCTGGAAGTGGGCCTATGTTCAAACAAACCACAGTGGCAGTGGATGGAGATAAGGGAGATGATGGTGGCTTCTCAAACGTAGATGGTGTTCCCATGACCCCAGACTGTACCGCAGAGGGATCATCAGGAGAGGACAAGGGAAGTTCGGGTTTTGGTGGTCAAAGCTCACCTAGACCCGGCCCAGCTATTAGTTTCTCCCTCCGTAAGAACACATCCTCTCCAACACCAAGTGGAGGGCCCCAGGCTCCCAAAGTCAGCGTTTCCTTCTCTTTTGCCAAAAAAGCACCAGTCAAACTGGAGACAGCAGCTGCTGTGTTTGCAGACCATGGAGAGGAAGCAATGGAAGGAGAAGAagggcaggaggaaggagtagAGAAGCCTCCAGTGGACGAAGGAGGTACAGTCTCCTCCAACAATGATAGTCCACAGGCTACAGCAGGAGCCCCAGCTGTAGGAACCACGGCTGTAGGAACCACGGCTGCAGGAGCCACCGCTGCAGGAGCCACCGCTGCAGGAGCCACCGCTGCAGGAGCCACCGCTGCAGGAGAAGATGACCAGGCACAGGCTGATGATGGAGGCACCTTGGCATCCACCCTAAACAAGCTTAAAATGATGATGAAGAAAGAAGAAGGTTACGCTGGGCAGGAACCACAGTATTATCACTACGTTCCTCCTGCGCACTGTCGGGTGAAGCCCCATTTCCAGTTCCTACTCTTCATGAAGGCTTCAGACCAGTGTGGCAGccgagaggaagaagaggatgGAGAAGAAGAGAAGGCAACATCAACGGAAGGAGATGTGGAACAAATACAGACCAAAGACCAAATTGTCTGCAAAACGGAGGAGGACACAGAtaaagacacagagaaagaaccTACAAAGGATCAGGGTCCAAATCCTGATTCATCTCCCAAAGTAAAAACAGAGGAAGGATCTGAGAGTAAGACAACAGCAGAGGGCAGTGTAGATTCTTCAGCCATTAATTCTCAACCAACAGAATCTAAACAGGGGACTTCTGAAACTCAAGAGACTGGACCCCGCATACCAACAGGACCCTTTTTTCCAGTGTTGAGTAAAGATGAAAGCACTACTTTACAGTGGCCCTCTGAACTCCTAGAGTTTACCAAGGCACATCCTTCCCTCTCTTACAGTTGCAACCCTCTATACTTTGACTTTAAACTGTCTAGGAACAAAGGCAACAGGGCAGGTAAAGCCAGTAAGCCTGGTAAACCAGCCAATGCTAGTGGAGATAATGGCGAAGGATCCAAGACTGAAGGCGCCATCACTACCACCACTGGCACAAGTGGAGAAACTAGCACAGCAGCAACGCCAGCACAGGCCAGCACTGACAAAAAAGAATCATCATCTGTGAAAGAAAAAGTTGCAGAGGGTGAGAACAAGGACAAAAGCAAGGAACAACAAGAAAGCACTGAAGATGGAGCTGGGGGctccaagaaaaagaaaaagaagaagaaacacaAGAAATCAAGTAAGCGTTCCAAACGCAAAGATAAAGAAAAGGCAGCtgcagagggagagatggagactGAGACACCTGGTGAAAagaccaaaaagaaaaagaaacacaagcgaaagaaaagtaaaaataaacaatacggTGAAGAAGAGGGAGAAGAAGGGGCCAAAGAGGGTAAAGAGAGTAGCAAAGAAGTTAAAGACAAAGATGACAAAGCTGGTGCCAGTGCCTCAAAGCAGGTTTCAGGAGGAGGATCAGGAGCGTCTGCTTTAGAGGGAGGAAGGAGAAAAAGACCCCATAAAGAAGTGTCCCAGAAGTCAGGGACGGAAGAGAGCAGCAGTGTAGGAAAGCCCAATTCTTCTGGAGCTGAGGAGCACAATGGTACAAAACGTCTCAAACCTGACCCCAGTGCTGCGTCTTGCTCTGCTTCTGCCCAAAAAAGCCCAGGTGGAGGTCGACCTCCTAGCAGTGAGAGTGAAGAAGATGGTGGTTCTTCATCTCAGCGTTCTCGTCCACCTCACCGGCGCACTACACCTTCACGTGAACAGCGACGCCACCACAGTGAGGAATCCAGGCGGTCAGGTCGTTCACATAGTCGCTCATCTCGCAGAGAAGACCGTAATCATAGACGTAACCGGGGGCAGGTGTCTCGTAGCCATTcgtattcaagcagttcagagcGTTCATCGGCCGGGAGCAGCGCTTACAGTCGGCATAGCCGCAGTTACTCAGACAGCTATAGCGACTACAGTGATGCAGAACGTCGCCGCAGGTCAAAAAGACGTTCTTCGGACTCAGAGTATGAAAGAAGAGGCGGTGGACGGTCGCACAGAAGACACTATTCATCCTCTTCTTCAGAAGAGGACTCTCGCTCGCGTTCCCGCTCTCACAGCCGGAGGAAGCATCACCGGCGGAGGCGCAATCGCAGCAGTAGCCGCAGTTCCAGccgcagcagcaggagcagcagtgCTCGCTCGTACAGACGCAGCAGCTACAGCCGCAGTCGCAGCTCTGCTAGTCGCTCATCTAGCTCTCCTAAAGGCTCACCTCACCGCCGCAGCGACAGCCGCCGAGATGACAGCTCAACACACAGACGAGACTTTAATCGATCACGCATCTATCGCTCGCAGTCACCAAGGTCCTCGTCATCCCGCCCACAACCACGAAACAGCAGTTCATCCACACAAAATGCCAAAGGAAGTGGGGGAGGTGGGTTGAGGGATGGCGGAGGTGCTGCAGAGCATCGGAACTCGTTCACAGCCAGGCAACTTCTCGAAAAAATCCAGTCTCGCAAGGGTGGGGAAGATTCTGGGACTGGAAGCAAACTTGGCCTCAAAATCAAGGACCCTCCACAGGGCTACTTTGGACCTAAGCTTCCCCCAGCCCTTGGAAACAAGAGCATGTTGCCTCTTTTTGGAAAGCTCCAAGCTGGGAAGAAACCTTCATTACTTGCCCTATTGCGGACAGACGATGGAGAAAAGTCTGGGCAGGGGAAGAGTTCTGATACAAGTAGTGAGGTGATCCTGGTGGAACCCATTCGTGAGTTTCCGCCTCCACCTCCAccgcctcctccaccagttcagcagaaacaacagcagcagcagcatcaacaacagcagcagcaacaggtGGAGGAACCAAACTCTAATGCTGCAGTCCCGGAAGAGATCAAAAACCCAACCTCAGAACCTCAAGTGCTCCACGAAGCAAGACCGATCTTTGAGCAAGATCCAGCTAACATTATTCCTTCCTACCAAGCTGAGCCAGGACAGGACCCCAACAACCAAATCATGGATGGCCGTCTAATAGGGCCTGACATGGGCCAACAAGCTTCCATGCATGGCTATCCAGGCTACCCCATGCCCAACATGGAGGATGAAAACATTGGAATGGAGGCTGAGGAGGACGGCTTGGCGCCACTGGAGAGCCAGCCCATTACTTTTACCCCAGAGGAGATGGAGAAATACAGCAAGCTGCAACaagcagcacagcagcacatccagcagcAGCTTTTAGCAAAGCAGGTCAAGACCTTCCCTTcggcagctgcagctgcagctgcggCCGCGGCCAACTTGGCGGCCGCTGCCAACCTCGCACCTGCACCTCCTCCTCCGCCTGCTGCTCTGCAGCAAATCCACATCCAGCAGCCCGCTGTGTCTGCAGCTTCAGCTACTTCCATCACTACAGTGCAGCATGCCATTCTGCAGCACCATGCAGCTGCCACAGCAATGGGCATTCACCACCATACCCCACACCATCCTCACCCTGCTCATGCTCAGCTTGCCCAGGTACATCATATACCGCAACACCATCTCACCCCAATTTCCTTGTCACCCTTGGGTCATACGTTGGGCCACTCCCTTGGTCACTCTTTGGGCCACACTGGTTTAATCCCAGCCCACCCCTCTGCCTTTCTATCCGGGCAACCAATACACATAATCCCAGCTTCCGCGCTCCACCACGCCCCTCTAGCTCTGCACCACATCCCCCACGCAGCCCTTTACCCCACGCTTTTCGCTCCTCGGCCGGGCACCGCAGCTGCTGCGGCCGCCCTGCAGCTCCACCCTCTTCTTCACCCCATTTTCTCAGGACAGGACCTTCAGCACCCTCCAAACCACGGGTCCTGAGATGGAGGCTGTCTTTCTCAGCATTgaggcaacaaaaaaaaaaacatttgagcaGTCAAAAAGGAGGAGTTGCAAGGATTGAAAGAACTTGAAATTGAAAAgcatttggtaaaaaaaaaagagaagctgaATGAAAAATCCTCCTGAGCCTGGGTAGTTTCCTGAGGATCACGAGCAAGATCAGGATGAAAGATTAGCTCACAAGTGAGTTCTTGCATCTGTTACAGACAAAACACCACCTGGAGTATTTTTGTCGATTCCAGTGGTGATCGTTGATTTCGTTTTTTTCGTACAGCCAAAGAGACTGAAACCACGCTGGCTGAGGGTTGATAAGTTCTGTGGGCATGTAGAATACAAACTTGTGACGTGAGGAAGATGCGATGACCGTTCGATGATTACTTTGGGATTTCACTTTGTAGAAGGGTGTTGGTATCTGGTGTCTGTCAGAGGAAATGTTGTAAATCGCAGAAATCGCAGACGGAatgtccataaaaaaaaaaattaaaaaaaaaattgtagaaaTTATGTATGAACCTGTTGTCTGGTCAAATCCAGTGCAGCAGCAGAGTTACCTTATCACACTTTGTCCTCCAAGTGCGTAACAGAACAGGAACAACAATTACTAAGTGGAATGGATTGAAGCCATATTTGTCATACTAAATGCATTGAAGTTTTAAATGGTTCGTTGTAAATCAGTGATATGAAATatgaagaaactgaagtgcttcaCGAAACGTCGACGTCGCAAGATGTTGCCGTTCCTTCTAAGTTACACTGTTTCGGGGTGCCCCCACCTTGTCAAGGACTTGACATGcactgaagaagaaaaaaaaaatgtacaccaGGATGCTGCTTTTGCATCATGTAAGAACTGTATGATTGTAGTATTctgcaataattttattttctatttgtttgattttaaattattttccagtgtttctttttttcctgagTTATCCCCACCCCAACCTTGTATAATTATCCCTTTGTAAATAGTTATCATAGACAAAAGCgtattgtaaaataatacaCCTTTGTAActgttgaaaagaaaaaaaatactacaggAAAAAGGATgtgataaaaagaagaaaaacaaacagaaaatggAGTCATACTTTTGATCAGGGCTGGTGCTGGTATAGAGGCCTATCCTGTTGTAACTGGGGTGGTCAGGAAGTGGGTCTGCAATGAAGAGGGACGTTTGGAAACTTCAATCGAACTGTACATGGCAGCAatgatatttacttttttattctttgttgaTGCGTCAGAAAATAAAGCGTTTTGAGATGTAAA

Function

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11986 lncRNA upstream 31283 7931133 ~ 7932921 (+) True G8788
TU11980 lncRNA upstream 57202 7906633 ~ 7907002 (+) True G8783
TU11970 lncRNA upstream 66275 7894388 ~ 7897929 (+) False G8777
TU11972 lncRNA upstream 66275 7894388 ~ 7897929 (+) False G8777
TU11968 lncRNA upstream 67300 7894388 ~ 7896904 (+) False G8777
TU11978 lncRNA downstream 232 8020266 ~ 8020713 (+) True G8781
TU11997 lncRNA downstream 7808 8027842 ~ 8037001 (+) True G8796
TU12006 lncRNA downstream 112769 8132803 ~ 8133010 (+) True G8804
TU12182 lncRNA downstream 139078 8159112 ~ 8159613 (+) True G8957
TU12198 lncRNA downstream 224415 8244449 ~ 8285944 (+) True G8972
XM_022673016.1 mRNA upstream 41675 7913373 ~ 7922529 (+) True bax
XM_022673009.1 mRNA upstream 57907 7898727 ~ 7906297 (+) True LOC103042396
XM_022676980.1 mRNA upstream 151908 7797622 ~ 7812296 (+) True LOC103047589
XM_022672959.1 mRNA upstream 693820 7269129 ~ 7270384 (+) True LOC111193218
XM_022672938.1 mRNA upstream 1093800 6817071 ~ 6870404 (+) False mpp3
XM_007229946.3 mRNA downstream 57890 8077924 ~ 8102541 (+) True LOC103045652
XM_007232221.3 mRNA downstream 418752 8438786 ~ 8441829 (+) True LOC103040872
XM_022673163.1 mRNA downstream 444082 8464116 ~ 8481457 (+) True LOC103021541
XM_022673172.1 mRNA downstream 584171 8604205 ~ 8684262 (+) True helz
XM_022673244.1 mRNA downstream 821055 8841089 ~ 8885543 (+) False lmtk2
XR_002650961.1 other upstream 1684514 6278969 ~ 6279690 (+) True LOC111194160
TU11320 other upstream 2234704 5728922 ~ 5729500 (+) True G8287
TU11173 other upstream 2625156 5332065 ~ 5339048 (+) False hcrt
trnac-gca_4 other upstream 3812802 4151331 ~ 4151402 (+) True trnac-gca_4
trnac-gca_3 other upstream 3813092 4151041 ~ 4151112 (+) True trnac-gca_3
TU12331 other downstream 575835 8595869 ~ 8596783 (+) True G9074
trnag-acc other downstream 581233 8601267 ~ 8601338 (+) True trnag-acc
TU12385 other downstream 789667 8809701 ~ 8810467 (+) True G9113
TU12401 other downstream 899809 8919843 ~ 8930980 (+) False bri3
TU12402 other downstream 899809 8919843 ~ 8930980 (+) True bri3

Expression Profile