RNA id: XM_007229946.3


Basic Information

Item Value
RNA id XM_007229946.3
length 4591
RNA type mRNA
GC content 0.40
exon number 5
gene id LOC103045652
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 8077924 ~ 8102541 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTCGGGGCGGGACAAGCGACGCGGCCCTTCGTAGACTTGTGAAAGCGCCATTTTGTTACCAGCGGTGAGGAGGAGACGGATTTTTGTTGAGAAGCCGGGCTAATAAGATCTGCCACCATGGGGAACATGTTTGCAGGCCTCTTTAAGAATCTCTTCGGGAAGAAAGAGATGCGTATTCTGATGGTGGGGTTGGATGCTGCTGGCAAAACCACCATCCTGTACAAGCTTAAACTGGGAGAGATAGTCACCACCATCCCCACTATTGGTTTTAACGTAGAGACAGTAGAATATAAGAACATTAGTTTCACAGTGTGGGATGTGGGCGGTCAGGATAAGATCCGACCCCTGTGGAGGCACTACTTCCAGAACACACAAGGTTTGATCTTCGTGGTGGACAGTAATGACAGGGAAAGAGTAAACGAGGCGAGAGAGGAGTTGACGAGGATGCTGGCTGAGGACGAGCTCAGAGACGCTGTGCTGCTCGTTTTCGCCAACAAACAGGACCTGCCCAACGCAATGAACGCCGCAGAGATCACAGACAAACTGGGCCTGCATTCGCTGAGGCACCGCAACTGGTACATCCAGGCCACCTGCGCCACCAGCGGAGACGGCCTGTACGAGGGCCTGGACTGGCTCTCCAACCAGCTCAAAAACGCTAAATGATCCATTCCACCTAGTCCTCTGCATTttgcgctgtgtgtgtgtgtgtgtgtgtgtgtgcgtgggtatgtgtgtgtgtgcgcgcgtgtgtgtagtgataatgACAGCGCTGGATTTAGTCTCTCGGTTCCCCACTTTAATCCATCCTTTTCCTCTTTGATTTGGTCCTGTTAGACTTTAGAGGCTCTCCCCAGTGCTGTCTAGTGCACACACACCAGGATGGAAGTgcgagcgtgtgtgtgagagaggcgAGAGTGGGAGCAGCCCTGCTGTGCCTTTTGAACACACATGCGTTTCATACAGCtcggttctctctctctctcaatctgtctctctatcttgatctctctctctctctctctctctgtttattccTCTCCATTTGTCCTGTCTCTGGTGCCCCCTTGATTTCCACAAGGCAAAGAATGACCCAGGAtgctaaatgttgttttttttgttttgttacttacagaataaataattatattgaaATAAAAAGTACAGTCTTGATTTTCATCCATCTGTCCGCATGTCGAAGATGTTACAAGGTTCACATTGTCACCCTTTTACCCCCACATATGATGAAACTCATTGTAACCTGCATCAGGTtgggagaaaagaaaagacaataaaGTGACGTTTTCCATCCTAGATCCTTCTTTGCGTTCTTTGAAAACGATGCAGTTGCGGCTATTCTTCCTCTTCAAAAGCCAGTTATTGATCTCTTCCCTCTTCTTCTATTCTCGTATCACCCACttgtttacagaaatgtgaggaTGCAGGTTCTTGTTAAATGCCAGCatgtctttttaaaatacaGCACCAAGGCATTTTACACACTGCACCCTGAAACTGATAAAGGCGCTACAAATGGTTCTTTTGAGTGATGGCATAGAAGAAGGTTTAACGTCTTGTTGGTTCCGTTAAGAAGCATGCATGCAACAGAACCTTTACATCTCAATTTATTAAATCTGGACCTTAATCTGGAGTTCATTTGATTGGCCATATGATGTCTCACATACCAAGGATCACATCaggcctgtttacacctggcattaacTAGGATTTTGTTTACACTTACAAACTGAACGGTTTAGAGGAAATGTGGGGTTCATTAATACGGTTAAGCAGATCTAAGAAGATCTATAAAAAAGGCAATGGATTACTTAAACGGCAAGGGAGCAAACTATACTTCTCTACTAGAAAGCATGCATGTAAAAGTGAGGGAGAGATTGAGCAAGAAAGAGAAGctaagattaacagtaaaaataactattataactttttcttttttaattgccTGAGTAGAATCTGAtcacaaaaaacaaatctgTTTACACTTCATCTTTGACCACTTCCAAACACGGTTTGAGTGTTCACATTTGGCTTTTAATCTAAACgagtaaaatctgtaaaaatcaccaaaaatacatgttaatgccaggtgtgaacaggttcAAAGTCCAGGAATGGAAACTGGATTTAAGGTTCAGATTTTATGATTTCTGATTTATATCTAGAAAATGTTTGTCATCCTAACCTAACACATCTTTACAAGCATGGTCTTCATCCTAATCCTCATCAACCAAAAGTGGTCTAATCTTCTGTGTTgctcctttatttttaaaagcataaaaatctcaaaaaaggACAGTGTTCTAATCTGAGAACAAATCAAGTTATGACCAACCTCATATAAACTGAGTATTCTCTAATACACTCCtaaaaatcaatcaaaaatCAAGGTGCTTAAATTGGTTCTTTAAGTGATGCCATAGAACTAACCATGGTCTTCAATCCTGTCCATTGAATCTGTTCCATATAGAAGTGTACCAGTCCTGAAGTTCTAAATGTGGTCCTTGTTATGTGATCGACAGTTTGACTGTTTTCAACTTCCAGTTAAacttccagtgtgaacgcaatTCAGGACTGAAAACTGGATTCAAAGTAGATTCACATTTGAAGACCTCGACAATAGAAGAACCTCTTTCCTTTTCATAATGTACATAATGTTTATTGTATGTGTGAGGAGCCTTAACATCAAGTAAAGGTTCTTTGGACCTTTTCCAAGGGGTTCCACTTATTTATGTACCCTAAAATGGTGGTTCTGCTGCATTACGTAAAGAACTATTTGTAGCACCTTTTATTGTtatgatttttgagtttttacaACCTAAAACGTCTTGATTAGGAGTCTGTGTTTGAGTGGAGGCTGTGCTTTAAAACAGAAGACCACCCAAGTGTAGTCTCAAGTGTGTGCTTAGAGAGTAGAGAGGCCTTTTTAGAGCTGCTCCCACTCTTTTCTAATTCTGTTCTTGTTTTCATTGTTCGTTGTATGGTCTGTTGAGTCAGGGGTGCGCTCAGTCGCTCTGGTTGTCCTCTCTTGGCCGCTAAGGGCTTGTTAAGTCTCTCTTCTTGCTTTCAGTTATATTTTtccccctttaaaaaaaaaatcccaagcTTCTAGGAGCCCATTAGATCTGCCAGAGGAAACGTTCACCATTACGAGGCAGTTTGATTACAGACCAGATTAAAGGCAGCTGCCTTTAATGGCAGACTCTAACGGCAGCTTAATTCTGAGCATATTAGCTATTCTATGCCTGTGGATCGATCATCGATCATGGCCTTTTTCCCCCCCCTCGCTTATTTCTTGCTGGCttctggctgtgtcccaaaccaaACCTATAGTCCATATATCCGAGAAGTCGCCCTCGATTAGACGTAACCATCAGACCATCGAAAACCTCCAAAACAACTGACAGATCGTTTCTTGCTTTCCCCTGGTGTGTCTGAAGTTATTCCAAAGGCTACTGCGCGCGAATGTTGTTGGTGTACATCCAGTAATCAATCCAGTACTTGCACACGCAACTTTCTGTAAGACAAGGCATCATTACTGACCCCTGAAGGTCATAATCCTGTTCCTGACCTCTTTCTTTCAAAGGAACGGGTGAGAAACAGGTGTTTACACCTGGTCGCTTTATGTGATTAATATCTAGATTTAGTAGATTTAGTATCCTGGTAAAGTTTGAGCTACATGAGTTTACACTTCGAAGGCAGTCAAAtgcaattctctctctctttttttttttttactaatatcgCTCTTTTGGTTCAGatttttcagcaagataatgctcgcccacacGCAGCAAGTTTCCTAGGAATGATGTCTCTGCAAGGTTTCTGCTTTCCTTTCTTGTGCTTAAgttcctgaagtggtttgaacAATCCGAAttgtatttgttgttgttgttgtttgggTGCATTTACACTTGTTGGTTTAAAGCTCATAATACCCTCTTTacctttaaaataacaaaaacaataaaactcaGAATCCGGACAAAAGGCTCTTTTTATAACTATTATCTAggtctgtttctttttctggtCCTTTTCCGGATATGATTCTGTAGTACTCAAGTCGCATtgagtgaccaggtgtaaatgcGGTCTAGGTCAGTCTACAACTGGACAGATGCGGTTTtaattttagtgtattttaattctattatcttttttcatttcttttttttttctttctttaccaAAATGCACCAAAACTCAAGCAAGATTTAAAACTCTAATGATTCTCATTTTTgttgcttaatttttttattgtaatgatCTCTTAAGAAATAACTGATTTGTTTTGAAGAAAACATCATCTGTATGGCAAGTAATACTGTGTAAGAACATGTATTTTAGCTAGCTGTTTCATTTAGCCACCCTTCTGTTCAGATGTGAAGCTTTAATTTGAAgacaattatgtaaaaaaaaaaaaagaagaaatgaagaaagaaaaacagcaagagaaggtgtgcatgtgtttttttgttttcttttcttttcttaagtttctttatttctagCTTTTTTAACCCATCTTGTAACATCTGAGAAATGCACTATAATAAAGAGATCTCTATTA

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07937 ARF1_2; ADP-ribosylation factor 1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11997 lncRNA upstream 40923 8027842 ~ 8037001 (+) True G8796
TU11978 lncRNA upstream 57211 8020266 ~ 8020713 (+) True G8781
TU11986 lncRNA upstream 145003 7931133 ~ 7932921 (+) True G8788
TU11980 lncRNA upstream 170922 7906633 ~ 7907002 (+) True G8783
TU11970 lncRNA upstream 179995 7894388 ~ 7897929 (+) False G8777
TU12006 lncRNA downstream 30262 8132803 ~ 8133010 (+) True G8804
TU12182 lncRNA downstream 56571 8159112 ~ 8159613 (+) True G8957
TU12198 lncRNA downstream 141908 8244449 ~ 8285944 (+) True G8972
TU12206 lncRNA downstream 179288 8281829 ~ 8303925 (+) True G8975
TU12240 lncRNA downstream 270749 8373290 ~ 8374141 (+) True G9002
XM_007229939.2 mRNA upstream 57890 7964173 ~ 8020034 (+) False gpatch8
XM_022673034.1 mRNA upstream 57890 7964173 ~ 8020034 (+) False gpatch8
XM_007229943.2 mRNA upstream 57890 7964204 ~ 8020034 (+) False gpatch8
XM_007229941.3 mRNA upstream 57890 7984532 ~ 8020034 (+) False gpatch8
XM_022673061.1 mRNA upstream 57890 7984538 ~ 8020034 (+) True gpatch8
XM_007232221.3 mRNA downstream 336245 8438786 ~ 8441829 (+) True LOC103040872
XM_022673163.1 mRNA downstream 361575 8464116 ~ 8481457 (+) True LOC103021541
XM_022673172.1 mRNA downstream 501664 8604205 ~ 8684262 (+) True helz
XM_022673244.1 mRNA downstream 738548 8841089 ~ 8885543 (+) False lmtk2
XM_022673237.1 mRNA downstream 738549 8841090 ~ 8885543 (+) True lmtk2
XR_002650961.1 other upstream 1798234 6278969 ~ 6279690 (+) True LOC111194160
TU11320 other upstream 2348424 5728922 ~ 5729500 (+) True G8287
TU11173 other upstream 2738876 5332065 ~ 5339048 (+) False hcrt
trnac-gca_4 other upstream 3926522 4151331 ~ 4151402 (+) True trnac-gca_4
trnac-gca_3 other upstream 3926812 4151041 ~ 4151112 (+) True trnac-gca_3
TU12331 other downstream 493328 8595869 ~ 8596783 (+) True G9074
trnag-acc other downstream 498726 8601267 ~ 8601338 (+) True trnag-acc
TU12385 other downstream 707160 8809701 ~ 8810467 (+) True G9113
TU12401 other downstream 817302 8919843 ~ 8930980 (+) False bri3
TU12402 other downstream 817302 8919843 ~ 8930980 (+) True bri3

Expression Profile