RNA id: XM_007236756.3


Basic Information

Item Value
RNA id XM_007236756.3
length 2659
RNA type mRNA
GC content 0.45
exon number 19
gene id LOC103046310
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 25643346 ~ 25660463 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTCTTTACAGCTGAGATTTGAGGGCTCTGCACAGTTTCAGTTGTTAGCAATGGAATTTACAGCTGCATTTCTTTTAGGTTTTGCTTTGTGCATTACTATTGTTAAAGGAGATGACTACTTTGACTACTATGACGAGCCAAAGGAGCATAAAAACTGCAGTTTAACAGAAATCATTCGTAAAGGTACAGTGAACTATTCCAAAGGAGGTGCTGTTGGGAGTGAGGTAACTTACCTCTGTAAGGATGGATATAAGCCTTACCCAGTGTCCAAAAAAGTCTGCAGCTCAAAAGGAACATGGGAACCCAAAACATCCACACCAAAATGTGAAGAGGATATTGATTACGGTGATTACGAGGAGCCCCAGAAGAACTGCTCGGTGGATGAGACCATAAAGGGTGGCAGGGTATCTTACTCCAACGGAGGTCTGGAGGGAAGTGTGCTGACATATGACTGTGAGTCTGGACAGTACCCTTATCCATTCAGGAGGAGAGTTTGTAACTCCAACGGGGAGTGGTCAGCCTTGGTGCTACCCTCTGGCAAAGGAGTGTCCACTGCCACATGCAAAAAGATGCTTTGTCCAGGACAGCTACAGCTGGACTATGGGGAGTTCCGGCCCAGGAAACAATGGTTTGGTGTGGGAGAAACCCAGACATTTTCTTGTAAGGAGGGATATGCCCTCCTTGGCTCAGCCCTGAGGAACTGCACTGAATGGGGCCATTGGACCGGTACCATGCCAGTGTGTGATGACCAAAGTGATGACTGCAGAAATCCTGGTGCTCCACCTGGGAGCATGCGCTCTGGCGATCGCTTTCGCACTGGAGATAAGGTGACTTACCGCTGCCAGTCAGACCTGGATCTTTTGGGGTCTGAGGTAAGAGAGTGTCTACCAGTAAGAGAATGGAGTGGAACAGATCCACGCTGCCAGGCTCAGCACACATTTGATCTACCAGCAACTGTGGCTCAAGCTTTGAgcagctctctctctgctgtgatGGAAGTTTCATCCCCTGACCACAAAAAGCAAGATCCAGACTATGGGAGAACCGTGAACATTGCAATAGGGCGTCTCaacatttttattctaattgACACTTCAGGAagcatttcagaaaaacaaTTTAGCAAGGCAAAGGAGGCCACTGCTAATCTAATACGCAAGttggACAGTTATGAAGTGGAAATTAAGTTTCATGTAATTTCCTATGCCAGTGAGCCTCACGAAATTGTAACCATCATGGACCCCAGGAGTAGCGATGGGGACTTTGTTGTGGAGAGGCTACTGGAGTTCAGTCACAAACAACATGGGACAAAAACTGGCACTAATCTTTATAAAGCCCTCTACTCAGTGTATGAAAGACTCGGCTTGGTTAAAGCCCAGAAAGGCAGTCACTTCAACGAGACTCAGAACGTCATTATCATTGAGACTGATGGTTTCTCCAACATGGGAGGAAACTCCAAATATGTTCTGGACCTGATCCGGGATCTCCTGGGCTATAAAACTGATCTGCAAGATAACACAGCAGAGGAACTACTTGATGTGTATGTGTTCGGGATTGGAGAAAACGTAAAGAGGAAAGAACTGAAAAACATTGCCTCTGTTAAAACCAAAGAGAGACATCTGTTTGTGCTGAGCCAGTATTCTGACCTTGGAGAGGTTTTCAACAAAATGATTAATGACACTGCTGTAATCAAGTGTGGAGTTGCTAAAGAGCTTGTTTATAAAGAGGGTGAAGAGCAGTCTCATGAAACTAATACCAGGCCTTGGCATGTCACTATTACTTGGAAAACAAAACCATGCCAGGGCGCCATTCTGACCGAGAACTGGGTGATCACAGCTGCTCACTGTCTGATTAAACTAAATAATCCGGAACCTGTAAACCCAAAGAACGTAGAAATTAAACATgGTAAAGGGAAATCAGTTGCCTCATTAGTAATCCTTCACCCAAGGTTCAATGTTACAGGCCTTAAGGATAAGAACATCAGTGAGTTTTATGACTACGATGTTGCACTGATTAAAGTGAGCAGTAAAATTAAGTTGACTCCTGCAACAAGGCCCATCTGTTTGCCATGTACTAAAGCTTCAAATCGAGCTCTCAAACTGAGTCCTGACTCCACCTGCAGGAGGCATGAAACTTTCCTAATCGATCTAAAGGAGACACAAGCATACTTCATCAGACAAGGAAAATCCCGCAGGCAGACTCACATCCAGACTGAGGAAAAGAGAAAGAACTGCATTGAGAAGTACAAACCACCCCTGGAATCAAACAAGCTGGTGACTCTGACTGACATCATTACCAATAGGTTCTTTTGCTCAGGAGGATCAGAAACGCACAAGGATGATATAACCTGCAaagGTGATTCCGGAGGCGCACTCTTTCTTCGTAAAGGCATGCGTTATTTCCAAGTGGGAATCGTGAGCTGGGGCACTGAGGAAATTTGTGATTCCAAAACCAAGTCAATTCGTGATTCACCTGAAGATGCTAGAGACTTCCACATCAGTTTGTTCTCCATTATGCCCTGGCTTAAAGAGCACCTGGACAAGGAACTGGAATTCCTGCCCATGTAAAACTGAACTGGTTACATAAGTTCTACATGTGTtaatatatatgattaaaacCTGCTCtcgtattaatatattaaatcaaaGACTGTATAAGAA

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K01335 CFB; complement factor B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18323 lncRNA downstream 73823 25514715 ~ 25569523 (-) False LOC111193737
TU18327 lncRNA downstream 119050 25523787 ~ 25524296 (-) False LOC111193738
TU18321 lncRNA downstream 123145 25514715 ~ 25520201 (-) False LOC111193737
TU18319 lncRNA downstream 123214 25514715 ~ 25520132 (-) True LOC111193737
XR_002650681.1 lncRNA downstream 123225 25516786 ~ 25520121 (-) False LOC111193737
TU18382 lncRNA upstream 95478 25755941 ~ 25758034 (-) True G13685
TU18477 lncRNA upstream 310942 25971405 ~ 25975983 (-) True G13769
TU18473 lncRNA upstream 341868 26002331 ~ 26006680 (-) False nars2
TU18522 lncRNA upstream 650972 26311435 ~ 26311750 (-) True G13801
TU18745 lncRNA upstream 1009656 26670119 ~ 26698793 (-) True G13960
XM_022675494.1 mRNA downstream 118743 25523832 ~ 25524603 (-) True LOC111193738
XM_022675398.1 mRNA downstream 417531 25219209 ~ 25225815 (-) True LOC111193727
XM_007236780.3 mRNA downstream 570828 25062687 ~ 25072518 (-) True rnf169
XM_015602314.2 mRNA downstream 587245 25050960 ~ 25056101 (-) False spcs2
XM_007236779.3 mRNA downstream 587371 25050960 ~ 25055975 (-) False spcs2
XM_022675523.1 mRNA upstream 13409 25673872 ~ 25680952 (-) False nudt8
XM_015602309.2 mRNA upstream 13474 25673937 ~ 25680956 (-) True nudt8
XM_007236774.3 mRNA upstream 168460 25828923 ~ 25905572 (-) True maml2
XM_007236775.3 mRNA upstream 252136 25912599 ~ 25998864 (-) True gab2
XM_007236776.2 mRNA upstream 341903 26002366 ~ 26015063 (-) True nars2
TU18307 other downstream 148894 25473734 ~ 25494452 (-) True G13630
TU17900 other downstream 1734575 23904183 ~ 23908771 (-) True G13322
TU17895 other downstream 1839528 23784471 ~ 23803818 (-) False LOC103035686
XR_002650646.1 other downstream 2089376 23539257 ~ 23553970 (-) False LOC111193708
TU18373 other upstream 64450 25724913 ~ 25726156 (-) True G13677
TU18474 other upstream 346779 26007242 ~ 26016396 (-) False nars2
TU18746 other upstream 1017818 26678281 ~ 26698793 (-) False G13960
TU18787 other upstream 1169558 26830021 ~ 26833598 (-) False fam109a
TU18929 other upstream 1238542 26899005 ~ 26902713 (-) True G14113

Expression Profile