RNA id: XM_007236781.3


Basic Information

Item Value
RNA id XM_007236781.3
length 4406
RNA type mRNA
GC content 0.41
exon number 14
gene id pgm2l1
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 24987066 ~ 25003911 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCGGCTGTTTTCTGCAGCTAGCGTTAACGCTGCGAGGTTGCCGCTGCCGGGATGTGTGTGATAACCTGACCGGTTTAAAGCGCTAAACCGCTGCTCCGGTTTTAGATTCTCGGAGTAGATTGAATTAATCAAACTAATATCCAGAGTTAACGCGAGGGAACTGAGAAATCAGGCAGGGCGCGATTTAGCGTGTGTTcgtgtctgctgctgctgattataGTTATGTGGCCAAATGAGGACCTGAACGCTAACTCTGACTGTGTGCTGAGCACCGGAGACCCCGCTCTGGATAAACTGATCAACCAGTGGATCTCCTGGGATAAGaaTGGAGCGACCCGTGAGCAGATCAAAATCCTGGTGCAGGAAGGGCGTGTGGAGGAACTCAGAAGAATACTGGGCTCCAGGATGACTTTTGGAACTGCTGGTCTGAGAGCAGCTATGGGAGCTGGCTTTTCTCGTGTCAACGATCTCACTGTAATCCAGTCAACACAGGGTATGTACGTATATCTGGCCAAGTGTTTCCCTGATCTGAGTAGCAGAGGCTTGGTGGTTGGCTACGACACACGAGCACAGGAGTGCAGTGGCTGCACCAGTGAAAGACTTGCACGACTGACAGCAGCTGTGATGCTTTGTAAAGATATTCCAGTTTATCTGTTTTCTACATATGTGCCTACCCCATTTGTGCCGTATGCTGTAAAGAAGATTGGAGCTGCTGCAGGTGTGATGATCACTGCCTCTCACAACAGAAAGGAGGATAATGGATACAAGGTATACTGGCAGAACGGTGCTCAGATTTCATCTCCACATGACAAGGAGATCTTACGCTGCATAGAAGAGAATACTGAGCCATGGCCTGAGTCCTGGAATGAAGACCTGGTTGAGGACAGCCCATTAAGGAGTGATCCACTGGAAGACGTCTGTCGCTGGTATATGGAGGAGCTGAGGACTGTCTGCTTCCAAAGaGAGCTCAACACAAGGTGTCCCTTGAAATTTGTGCATTCATCTTTCCATGGAGTTGGCCATTCATATGTCCAAAGAGCATTTCAGGCGTTTGGGTTTCCACCTCCTATCCCTGTACCAGAGCAGATGAATCCAGATCCAAACTTTTCCACTGTCAGCTGCCCTAATCCAGAAGAAGGAGAATCAGTTCTGGAGCTCTCCCTTCGTCttgcagagagagaggaagccaAGATTGTGCTGGCCACAGACCCTGATGCAGATCGGCTGGCTGTTGCAGAACAATGTGATAAGTGTGGTTGGAAAGTATTCACGGGGAATGAGCTGGCTGCATTGCTTGGTTGGTGGATGCTGTACAACTGGAAAGAGGCTCATCCAGACCCAGAAGACACAGAAAGGGTGTACATGCTGGCCACCACAGTCTCCTCCAAAATACTTCAAGCTCTGGCGCAAAAGGAAGGCTTCCATTTTCAGGAAACATTGCCTGGCTTCAAATGGATTGGAAATAAAATCCATGAGTTAACAAAAACAGGAAAGGAGGTCATTTTTTCCTTTGAAGAGTCCATTGGGTTTCTGTGTGGGAGCATGGTGCTGGACAAGGATGGAgtcagtgctgctgctgttgtcgCGGAGATGGCAGCACATTTACATACCAAAAATATAACTCTTAAGCAGCAACTTCAATATATCTATGAAATTTATGGCTTCCACATTTCCAGAACCTCTTATGTTATCTGCAACGACCCTCCCACAGTCAAGAGAATATTTACTCGCTTACGAAATTTTGAAGACGAGGGTGTTTATCCAAGGAAGTGTGGGGGATACAGCATTGCACACGTCAGAGATGTGACTACAGGTTATGACAGTAGTCAACCTGACAAAAGATCTgttctCCCAGTGACCAAAAGCAGCCAAATGGTCACGTTCACATTTCACAACGGCATTGTTGCCACGCTTAGGACAAGTGGAACAGAGCCAAAAATCAAGTACTACACTGAGTTCTGTGCACCACCTGGAAAGAGaGATCTGTTCAGCCTTGAAGATGAGTTGAAGAAACTGGCCTCTGCTCTGCTGGAGGAGTTTCTAGAACCTGAGAAAAACAATCTGATTCGCAGATCAGTGTAGAAGTGTCTTACATACAGTGACTGCCATCCCTGTTGgcgtatttaatttaaatagagTTTCAAACTCTGAATGTTATTACACCACTGTGAAAAGATGTCCATTGCTGCAAAGTTCTTAAGGTGCAGATCAATGCAGAGTAAACAAGCATACTTAGTCCTGCCTTTTGAGATTTATGTATTATAagcattatatttaattatgtgGTTTTCTTGAAAACAAGAGTGTTCAGTTCTAAGCAGTTATATGGTTTTATCCCCTACATAACGTTTTGGTGTTGGCTTGTTATGGGGTGATTGTTCTGATCAGTTTCCACAGTGTGGAATGCAACCTTGTGTTTGATAATACAGAGAGTTTATTACCTTTAACAGAGCTGAAAGTCATTGATTGTCTGCCCACAATGCACTTCCAAATAAAATCTgacatttctttcattttttgatGTAGAAACAGTAATTAGCATAACTGAATTATTTTTGACATGGTAATTGCTCTTGTTGGGCAGGAGAACTCCTAAACAAGACACATTTACATAATTTGCTAAATAATGtgcacatatatttattttattaacttcTCCAGTTAATGAACAAGCTTTGTTAAAAATAGCAGTGTATTACAAGGCATTAATAAGCCATTACGCTACTGTAGAACAGATTGATTTACTGGTTTTCCAGATTGCAGTTTGACAGTAACCCATTTTGCACATGCTCAGTAAACCCAGAATCTGGAAATTGTACCAGACCTTACCCAGACCTCATCCTGTCAGCCCCCTAGTACACATTGTGGGTGTTTATGGGAGCCTAAGTGTGAATAGAGCAGGTCATTTTCTGAAAAATTCCACAGTGGGTCGTTCCCTACCTTCTACAGGCACTACACATGCTGTATTTCCTGTGGTGATGGTGTATCATCTCAGGCTGTATGCTGTATGTGTTTAAGAAGAGCTCCAGCTAATATCTGCTTCTCTGGGTATTTTCTGAGTTCTTGTGTAAAACCAGACTTGCTGCTTTGCTTGTGTGAGCTGCAGAAAGGGATATGACATGTTATTAACTCACTCATTTAGCAGACAGATGAATCTGCACTAGCTTGAGCTATTACTACTCAAGTAGCTTTGATCACTGAAAGGGAGGAAACTAGCATTCACTTATAAGTTGCTTAGTATAATTTATATGTCGTGTGCACATAATGTGTACATTTCAACAACAGTCAAATAGACAAAGCAATAGACAAAGGATACTTACAGTAAGGGGTGTCACATGAGTTCTAGTTGTTAATATTGCAACCCATGTGACTCCCCTTATTTAATAGTTTGTAACAAAGCTGAGGTGTCTACTCGGAAgcaattaaataatgtaaatgctTGCAGTGTAGATAAGAACACCAGTAACAGTTTTCTAGACCAGCCAGTGAAGGTTAAGTTGTTTTAACCACGACTCGAAACCTATTTTCACCAAGTATAATGCTGTTTATAATAAAGGTAATATAGTTTTAACTTGCTTTACTGCTTAATGGTTTGAACTATGATTTCTTAAGTATGCCAAATTGCATACTACCACTGCTCTGTATAGTTTAGCACCCAgttcataataaaaatattaatcagaatataaataaaattagcaaAATGTGCAGGATAGGAATAAACCGGGACCAGAATAAGGAAACGCTGTAATAAGACTTCATGTTAGGCAAACGTGGTATATTAAACACTGCACAGATTAAgaaaatctttatttagttaTACATTAGTATGTTTTCTAACCATTTAGAATAATGCTAGTGCTGCTTCTGAGACCAGTGCTGAATTGTAATGACGTCTTACAGGCTTTGAAGAATCAGTTTTCTCCCAGCTGGTTGTTTAACAGGTGTTACCCATTATGTTCCTGATGAAAATAGAAAGCCATCCCCTGTGCTGTGCAGCAGATATGTCAGTGTTCTGTTCTGTGTATGGTGTTCTGTggattttgtttgtgtgtgaaagtcttcataacaaaaaaaaaaggacttgCTGCTTTTTTTCGTACAGAATTTCCTTTTGTAGAGCTTCAGGTGTTTTCaatgctttattatttatgagATTTATTAGCAAGTTATTCACATTATACCATGTAGAACTTGGCCTGGATGATGAAGATTGTGACAGAAAGCACTTATTGCTGGTAATGTACAGTGGTTCAAAGAACagataatatattttagataaacAGCAGTTTTGAaatccaaaagaaaaaaatattctgtgtgAAAGAATAAAATTTGTGTTACTTATGCTATATTTCATgcattgcattttattttaccaataaAACGTTGCTTTAGAAAACTGA

Function

GO:

id name namespace
GO:0016052 carbohydrate catabolic process biological_process
GO:0005829 cytosol cellular_component
GO:0004614 phosphoglucomutase activity molecular_function

KEGG:

id description
K11809 PGM2L1; glucose-1,6-bisphosphate synthase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18035 lncRNA downstream 18235 24968292 ~ 24968831 (-) True G13427
TU18027 lncRNA downstream 177995 24775808 ~ 24809071 (-) True G13419
TU17994 lncRNA downstream 274081 24707486 ~ 24712985 (-) True G13393
TU17991 lncRNA downstream 322028 24664593 ~ 24665038 (-) True G13390
XR_002650656.1 lncRNA downstream 500338 24477718 ~ 24486728 (-) True LOC111193726
TU18099 lncRNA upstream 39329 25043240 ~ 25043516 (-) True G13476
TU18100 lncRNA upstream 41195 25045106 ~ 25045309 (-) True G13477
TU18093 lncRNA upstream 47063 25050974 ~ 25055701 (-) True spcs2
TU18104 lncRNA upstream 57799 25061710 ~ 25062064 (-) True G13481
TU18108 lncRNA upstream 72275 25076186 ~ 25083642 (-) True G13483
XM_007258876.3 mRNA downstream 287606 24690075 ~ 24699460 (-) True ppm1d
XM_022677939.1 mRNA downstream 299888 24567591 ~ 24687178 (-) True brip1
XM_022675270.1 mRNA downstream 1039688 23928815 ~ 23947378 (-) True nlrx1
XM_022675374.1 mRNA upstream 3081 25006992 ~ 25038802 (-) True LOC103033355
XM_015602314.2 mRNA upstream 47049 25050960 ~ 25056101 (-) False spcs2
XM_007236779.3 mRNA upstream 47049 25050960 ~ 25055975 (-) False spcs2
XM_007236780.3 mRNA upstream 58776 25062687 ~ 25072518 (-) True rnf169
XM_022675398.1 mRNA upstream 215298 25219209 ~ 25225815 (-) True LOC111193727
TU17900 other downstream 1078295 23904183 ~ 23908771 (-) True G13322
TU17895 other downstream 1183248 23784471 ~ 23803818 (-) False LOC103035686
XR_002650646.1 other downstream 1433096 23539257 ~ 23553970 (-) False LOC111193708
XR_002650645.1 other downstream 1433096 23541334 ~ 23553970 (-) True LOC111193708
TU17143 other downstream 2992315 21993807 ~ 21994751 (-) True G12767
TU18307 other upstream 469823 25473734 ~ 25494452 (-) True G13630
TU18373 other upstream 721002 25724913 ~ 25726156 (-) True G13677
TU18474 other upstream 1003331 26007242 ~ 26016396 (-) False nars2
TU18746 other upstream 1674370 26678281 ~ 26698793 (-) False G13960
TU18787 other upstream 1826110 26830021 ~ 26833598 (-) False fam109a

Expression Profile